Accession | GMS-137-1
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Title | chemical shifts of histone H3 and H4 N-tail in nucleosome |
Submit date | 2025-05-12 10:11:48 |
Last update date | 2025-05-14 12:33:49 |
Contact | Ayako FURUKAWA furukawa.ayako.5w AT kyoto-u.ac.jp Kyoto University |
Sharing | |
Total file size | 3.38 MB |
Keywords | Nanoscale Solution NMR |

Experiment type | solution NMR |
Summary | In contrast to the nucleosome, H3 N-tail acetylation
and dynamics are greatly suppressed in the NCP regardless of H4 N-tail acetylation because the H3 N-tail is strongly bound between two DNA gyres. In the chromatosome, the asymmetric H3 N-tail adopts two conformations: one contacts
two DNA gyres, as in the NCP; and one contacts linker DNA, as in the nucleosome.
However, the rate of H3 N-tail acetylation is similar in the chromatosome and
nucleosome. Thus, linker DNA and linker histone both regulate H3-tail dynamics
and acetylation.
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Citation(s) | DOI: 10.1016/j.isci.2022.103937 https://bmrb.io/data_library/summary/index.php?bmrbId=51262 |
Organism | Human |
Cell (Tissue) | not applicable |
Protocol |
NMR experiments were performed on AVANCE 600-MHz and AVANCE III HD 950-MHz spectrometers with
a triple-resonance TCI cryogenic probe (Bruker Bio Spin) at 298 K using 110 uM samples dissolved in
25 mM MES (pH 6.0), 25mM NaCl, 2 mM DTT, and 5% D2O. Three-dimensional transverse relaxation
optimized spectroscopy (TROSY) of HNCO, HN(CA)CO, HNCA, HN(CO)CA, HNCACB, and HN(CO)CACB
was used to obtain sequential assignments of the backbone 1H, 13C, and 15N chemical shifts of the H3 and
H4 N-tails in the nucleosome.
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Data processing | NMR data were processed by NMRPipe (Delaglio et al., 1995), and analyzed by Magro (Kobayashi et al., 2007), NMRViewJ (Johnson and Blevins, 1994: One Moon Scientific, Inc., Westfield, NJ, USA), and PINT (Ahlner et al., 2013). |
[949] H3Ntail.pdf
human H3.1 N-tail (1-36)aa application/pdf 1.53 MB MD5: 85ff5d380fcacc1d8727dd2eb8dc417f |
[950] H4Ntail.pdf
human H4 N-tail (1-15)aa application/pdf 1.52 MB MD5: 98f0183b2ba90a31268e1c50d0b1a76a |
[1013] fx1_lrg.jpg
no description image/jpeg 330.42 KB MD5: 4c6c06b99b6d83a3e4d94b7850b619d0 |