Information
Accession GMS-137-1 

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Titlechemical shifts of histone H3 and H4 N-tail in nucleosome
Submit date2025-05-12 10:11:48
Last update date2025-05-14 12:33:49
Contact Ayako FURUKAWA
furukawa.ayako.5w AT kyoto-u.ac.jp
Kyoto University
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Total file size3.38 MB
Keywords Nanoscale Solution NMR 
 Study
Experiment type solution NMR
Summary
In contrast to the nucleosome, H3 N-tail acetylation and dynamics are greatly suppressed in the NCP regardless of H4 N-tail acetylation because the H3 N-tail is strongly bound between two DNA gyres. In the chromatosome, the asymmetric H3 N-tail adopts two conformations: one contacts two DNA gyres, as in the NCP; and one contacts linker DNA, as in the nucleosome. However, the rate of H3 N-tail acetylation is similar in the chromatosome and nucleosome. Thus, linker DNA and linker histone both regulate H3-tail dynamics and acetylation. 
Citation(s) DOI: 10.1016/j.isci.2022.103937
https://bmrb.io/data_library/summary/index.php?bmrbId=51262
 Experiment
OrganismHuman
Cell (Tissue) not applicable
Protocol
NMR experiments were performed on AVANCE 600-MHz and AVANCE III HD 950-MHz spectrometers with a triple-resonance TCI cryogenic probe (Bruker Bio Spin) at 298 K using 110 uM samples dissolved in 25 mM MES (pH 6.0), 25mM NaCl, 2 mM DTT, and 5% D2O. Three-dimensional transverse relaxation optimized spectroscopy (TROSY) of HNCO, HN(CA)CO, HNCA, HN(CO)CA, HNCACB, and HN(CO)CACB was used to obtain sequential assignments of the backbone 1H, 13C, and 15N chemical shifts of the H3 and H4 N-tails in the nucleosome. 
Data processing NMR data were processed by NMRPipe (Delaglio et al., 1995), and analyzed by Magro (Kobayashi et al., 2007), NMRViewJ (Johnson and Blevins, 1994: One Moon Scientific, Inc., Westfield, NJ, USA), and PINT (Ahlner et al., 2013). 
 Analysis
[949] human H3.1 N-tail (1-36)aa



H3Ntail.pdf (1.53 MB)  
[950] human H4 N-tail (1-15)aa



H4Ntail.pdf (1.52 MB)  
[1013] no description
fx1_lrg.jpg (330.42 KB)  
 Supplements [download all]
[949] H3Ntail.pdf
 human H3.1 N-tail (1-36)aa
 application/pdf 1.53 MB MD5: 85ff5d380fcacc1d8727dd2eb8dc417f
[950] H4Ntail.pdf
 human H4 N-tail (1-15)aa
 application/pdf 1.52 MB MD5: 98f0183b2ba90a31268e1c50d0b1a76a
[1013] fx1_lrg.jpg
 no description
 image/jpeg 330.42 KB MD5: 4c6c06b99b6d83a3e4d94b7850b619d0