Information
Accession GMS-64-19 

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TitleHi-C on HAP-1 +/- WAPL or SCC4 KO
Submit date2025-01-31 22:59:28
Last update date2025-01-31 22:59:28
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size9.50 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI3A3VYWU
Assay Details: MboI
Dataset: Hi-C on HAP-1 +/- WAPL or SCC4 KO
Condition: WAPL knock out
Notes: N/A
Biosource: HAP-1
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI3A3VYWU/@@download/4DNFI3A3VYWU.hic

4DNFI4SNMW2H
Assay Details: MboI
Dataset: Hi-C on HAP-1 +/- WAPL or SCC4 KO
Condition: WAPL knock out
Notes: N/A
Biosource: HAP-1
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI4SNMW2H/@@download/4DNFI4SNMW2H.hic
Citation(s) 4DNES76KXUJ3
 Experiment
OrganismHuman
Cell (Tissue) HAP-1
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[582] 4DNFI3A3VYWU: WAPL knock out
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFI3A3VYWU.hic (4.74 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
[583] 4DNFI4SNMW2H: WAPL knock out
 JuiceBox    Domain Calling   Browse 
Human (hg38); Hi-C
 		 
HiC
4DNFI4SNMW2H.hic (4.76 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[582] 4DNFI3A3VYWU.hic 
 4DNFI3A3VYWU: WAPL knock out
 application/octet-stream 4.74 GB MD5: 3d9b57e6cce1533f1c48115a82b44d91
[583] 4DNFI4SNMW2H.hic 
 4DNFI4SNMW2H: WAPL knock out
 application/octet-stream 4.76 GB MD5: 8b371058932eae1b204a53df2e2e5dfd