Information
Accession GMS-64-20 

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TitleHi-C on HAP-1 +/- WAPL or SCC4 KO
Submit date2025-01-31 10:44:58
Last update date2025-01-31 10:44:58
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size7.65 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIRQF7JOU
Assay Details: MboI
Dataset: Hi-C on HAP-1 +/- WAPL or SCC4 KO
Condition: SCC4 knock out
Notes: N/A
Biosource: HAP-1
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIRQF7JOU/@@download/4DNFIRQF7JOU.hic

4DNFI6JJQKFJ
Assay Details: MboI
Dataset: Hi-C on HAP-1 +/- WAPL or SCC4 KO
Condition: SCC4 knock out
Notes: N/A
Biosource: HAP-1
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI6JJQKFJ/@@download/4DNFI6JJQKFJ.hic
Citation(s) 4DNESNLXBFMY
 Experiment
OrganismHuman
Cell (Tissue) HAP-1
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[585] 4DNFI6JJQKFJ: SCC4 knock out
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFI6JJQKFJ.hic (3.82 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
[584] 4DNFIRQF7JOU: SCC4 knock out
 JuiceBox    Domain Calling   Browse 
Human (hg38); Hi-C
 		 
HiC
4DNFIRQF7JOU.hic (3.84 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[585] 4DNFI6JJQKFJ.hic 
 4DNFI6JJQKFJ: SCC4 knock out
 application/octet-stream 3.82 GB MD5: da7070e55352e81d1aa9e47510b643a0
[584] 4DNFIRQF7JOU.hic 
 4DNFIRQF7JOU: SCC4 knock out
 application/octet-stream 3.84 GB MD5: c287b94c204647ca4b85eabcd125b4ac