Information
Accession GMS-64-26 

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TitleHi-C on HCT116
Submit date2025-02-04 14:00:15
Last update date2025-02-04 14:00:15
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size5.37 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIHSUIRFY
Assay Details: Arima - A1, A2
Dataset: Hi-C on HCT116
Condition: WAPL KD
Notes: N/A
Biosource: HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIHSUIRFY/@@download/4DNFIHSUIRFY.hic

4DNFIEDJH823
Assay Details: Arima - A1, A2
Dataset: Hi-C on HCT116
Condition: WAPL KD
Notes: N/A
Biosource: HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIEDJH823/@@download/4DNFIEDJH823.hic
Citation(s) 4DNES1JP4KZ1
 Experiment
OrganismHuman
Cell (Tissue) HCT116
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[592] 4DNFIEDJH823: WAPL KD
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFIEDJH823.hic (2.53 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
[591] 4DNFIHSUIRFY: WAPL KD
 JuiceBox    Domain Calling   Browse 
Human (hg38); Hi-C
 		 
HiC
4DNFIHSUIRFY.hic (2.84 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[592] 4DNFIEDJH823.hic 
 4DNFIEDJH823: WAPL KD
 application/octet-stream 2.53 GB MD5: 0265b67832e67b2c31f812893943058e
[591] 4DNFIHSUIRFY.hic 
 4DNFIHSUIRFY: WAPL KD
 application/octet-stream 2.84 GB MD5: 3769dd25a909ac9c1c0d6bb18d5d9d0a