Information
Accession GMS-64-29 

URL copied to the clipboard
TitleHi-C on HCT116
Submit date2025-02-04 14:08:03
Last update date2025-02-04 14:08:03
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size6.46 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI5Q92UVL
Assay Details: Arima - A1, A2
Dataset: Hi-C on HCT116
Condition: wild-type
Notes: N/A
Biosource: HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI5Q92UVL/@@download/4DNFI5Q92UVL.hic

4DNFIXTAS6EE
Assay Details: Arima - A1, A2
Dataset: Hi-C on HCT116
Condition: wild-type
Notes: N/A
Biosource: HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIXTAS6EE/@@download/4DNFIXTAS6EE.hic
Citation(s) 4DNESNSTBMBY
 Experiment
OrganismHuman
Cell (Tissue) HCT116
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[595] 4DNFI5Q92UVL: wild-type
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFI5Q92UVL.hic (3.04 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
[596] 4DNFIXTAS6EE: wild-type
 JuiceBox    Domain Calling   Browse 
Human (hg38); Hi-C
 		 
HiC
4DNFIXTAS6EE.hic (3.42 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[595] 4DNFI5Q92UVL.hic 
 4DNFI5Q92UVL: wild-type
 application/octet-stream 3.04 GB MD5: ea9095c35f2aaadfaffc24f3cb75a6aa
[596] 4DNFIXTAS6EE.hic 
 4DNFIXTAS6EE: wild-type
 application/octet-stream 3.42 GB MD5: d97443721c4c64e9861b7c6be0ef9cd1