Information
Accession GMS-64-33 

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TitleHi-C on RAD21-AID tagged HCT-116
Submit date2025-02-04 14:28:42
Last update date2025-02-04 14:28:42
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size19.78 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFILIM6FDL
Assay Details: MboI
Dataset: Hi-C on RAD21-AID tagged HCT-116
Condition: 6h auxin treatment
Notes: N/A
Biosource: HCT116 with Crispr generated mClover and AID-tagged RAD21
File Download URL: https://data.4dnucleome.org/files-processed/4DNFILIM6FDL/@@download/4DNFILIM6FDL.hic
Citation(s) 4DNESJV9TH8Q
 Experiment
OrganismHuman
Cell (Tissue) HCT116
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[600] 4DNFILIM6FDL: 6h auxin treatment
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFILIM6FDL.hic (19.78 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[600] 4DNFILIM6FDL.hic 
 4DNFILIM6FDL: 6h auxin treatment
 application/octet-stream 19.78 GB MD5: 68dc1a5349793ca519a8f1beef5e3531