| Accession | GMS-64-5
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| Title | Transcriptome and Histones in Germinal Center B Cell |
| Submit date | 2023-01-30 11:41:02 |
| Last update date | 2023-01-31 17:55:53 |
| Contact | Sung-Joon PARK park AT hgc.jp The University of Tokyo |
| Sharing | |
| Total file size | 11.10 GB |
| Keywords | Histone GC B cell transcriptome |
| Experiment type | ChIP-seq data of Histone Marks in NB and GCB prepared from DeepBlue (https://deepblue.mpi-inf.mpg.de/). RNA-seq datasets are SRR3743470 (Rep1) and SRR3743471 (Rep2). |
| Summary | H3K4me3 S00Y9OH1.ERX712722.H3K4me3.bwa.GRCh38.20150527.bed etc. H3K4me1 S00Y9OH1.ERX712723.H3K4me1.bwa.GRCh38.broad.20150527.bed etc. H3K27ac S00Y9OH1.ERX712724.H3K27ac.bwa.GRCh38.20150527.bed etc. H3K36me3 S00Y9OH1.ERX712725.H3K36me3.bwa.GRCh38.broad.20150527.bed etc. H3K9me3 S00Y9OH1.ERX712726.H3K9me3.bwa.GRCh38.broad.20150527.bed etc. H3K27me3 S00Y9OH1.ERX712727.H3K27me3.bwa.GRCh38.broad.20150527.bed etc. GCB_1_RNA (RNA-seq Rep1) SRR3743470 GCB _2_RNA (RNA-seq Rep2) SRR3743471 |
| Citation(s) |
| Organism | Human |
| Cell (Tissue) | Germinal Center B Cell |
| Protocol | Histone ChIP-seq The protocol will be found from DeepBlue website (https://deepblue.mpi-inf.mpg.de/) |
| Data processing | The ChIP-seq BED files downloaded from DeepBlue were processed by >2 fold-change and < 0.05 q-value. The RNA-seq FASTQ files were processed by Trimmomatic and Hisat2. |
| [1] | Transcriptome (GCB Rep1) GCB_1_RNA.cram (4.23 GB) Human (hg38); RNA-Seq |
 CRAM |
| [2] | Transcriptome (GCB Rep2) GCB_2_RNA.cram (6.86 GB) Human (hg38); RNA-Seq |
CRAM |
| [3] | H3K27ac H3K27ac.bigwig (3.14 MB) Human (hg38); ChIP-Seq |
BW |
| [4] | H3K27me3 H3K27me3.bigwig (2.68 MB) Human (hg38); ChIP-Seq |
BW |
| [5] | H3K36me3 H3K36me3.bigwig (1.24 MB) Human (hg38); ChIP-Seq |
BW |
| [6] | H3K4me1 H3K4me1.bigwig (2.57 MB) Human (hg38); ChIP-Seq |
BW |
| [7] | H3K4me3 H3K4me3.bigwig (1.19 MB) Human (hg38); ChIP-Seq |
BW |
| [8] | H3K9me3 H3K9me3.bigwig (3.01 MB) Human (hg38); ChIP-Seq |
BW |
