Information
Accession GMS-64-60 

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TitleHi-C on mouse cerebellar granule neurons
Submit date2025-02-10 10:52:07
Last update date2025-02-10 10:52:07
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size8.91 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFILCDVPW5
Assay Details: MboI
Dataset: Hi-C on mouse cerebellar granule neurons
Condition: 8 day old neurons - Etv1 KD
Notes: N/A
Biosource: cerebellar granule neuron - 8 days old
File Download URL: https://data.4dnucleome.org/files-processed/4DNFILCDVPW5/@@download/4DNFILCDVPW5.hic

4DNFIBY3K18K
Assay Details: MboI
Dataset: Hi-C on mouse cerebellar granule neurons
Condition: 8 day old neurons - Etv1 KD
Notes: N/A
Biosource: cerebellar granule neuron - 8 days old
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIBY3K18K/@@download/4DNFIBY3K18K.hic
Citation(s) 4DNESUWNG5PW
 Experiment
OrganismMouse
Cell (Tissue) cerebellar granule neuron - 8 days old
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[641] 4DNFIBY3K18K: 8 day old neurons - Etv1 KD
 JuiceBox    Domain Calling   Browse  Browse (All)
Mouse (mm10); Hi-C
 		 
HiC
4DNFIBY3K18K.hic (4.68 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
[640] 4DNFILCDVPW5: 8 day old neurons - Etv1 KD
 JuiceBox    Domain Calling   Browse 
Mouse (mm10); Hi-C
 		 
HiC
4DNFILCDVPW5.hic (4.23 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[641] 4DNFIBY3K18K.hic 
 4DNFIBY3K18K: 8 day old neurons - Etv1 KD
 application/octet-stream 4.68 GB MD5: 34c9a66abc9644faaffd56cf2c93ebb2
[640] 4DNFILCDVPW5.hic 
 4DNFILCDVPW5: 8 day old neurons - Etv1 KD
 application/octet-stream 4.23 GB MD5: 5023172dbff8b6c858cc467baa2bf6f0