Information
Accession GMS-64-76 

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Titlein situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
Submit date2025-02-18 15:29:25
Last update date2025-02-18 15:29:25
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size18.02 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIB7KBAH5
Assay Details: Arima - A1, A2
Dataset: in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
Condition: TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
Notes: N/A
Biosource: WTC-11 differentiated to cardiac muscle cell
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIB7KBAH5/@@download/4DNFIB7KBAH5.hic

4DNFIPVMIIRE
Assay Details: Arima - A1, A2
Dataset: in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
Condition: TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
Notes: N/A
Biosource: WTC-11 differentiated to cardiac muscle cell
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIPVMIIRE/@@download/4DNFIPVMIIRE.hic
Citation(s) 4DNES8CZNQCU
 Experiment
OrganismHuman
Cell (Tissue) WTC-11 differentiated to cardiac muscle cell
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[664] 4DNFIB7KBAH5: TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFIB7KBAH5.hic (9.20 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
[665] 4DNFIPVMIIRE: TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
 JuiceBox    Domain Calling   Browse 
Human (hg38); Hi-C
 		 
HiC
4DNFIPVMIIRE.hic (8.82 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
 Supplements
[664] 4DNFIB7KBAH5.hic 
 4DNFIB7KBAH5: TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
 application/octet-stream 9.20 GB MD5: 637b0fc09e2285095b6b7150308a14f6
[665] 4DNFIPVMIIRE.hic 
 4DNFIPVMIIRE: TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
 application/octet-stream 8.82 GB MD5: 0840cc4673b9766bbfe2cf97f62d27dc