Information
Accession GMS-64-77 

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Titlein situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
Submit date2025-02-18 15:29:31
Last update date2025-02-18 15:29:31
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size17.09 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIPTFHCFP
Assay Details: Arima - A1, A2
Dataset: in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
Condition: TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
Notes: N/A
Biosource: WTC-11 differentiated to cardiac muscle cell
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIPTFHCFP/@@download/4DNFIPTFHCFP.hic

4DNFIG6NF7VN
Assay Details: Arima - A1, A2
Dataset: in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
Condition: TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
Notes: N/A
Biosource: WTC-11 differentiated to cardiac muscle cell
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIG6NF7VN/@@download/4DNFIG6NF7VN.hic
Citation(s) 4DNES23G2JHL
 Experiment
OrganismHuman
Cell (Tissue) WTC-11 differentiated to cardiac muscle cell
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[667] 4DNFIG6NF7VN: TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFIG6NF7VN.hic (8.67 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
















































failed 
[Domain] X:1605000-2620000 (41 bins,25Kb)
[Domain] X:25200000-38100000 (516 bins,25Kb)
[Domain] X:30600000-38200000 (304 bins,25Kb)
[Domain] X:49600000-53000000 (136 bins,25Kb)
[Domain] X:62000000-85000000 (920 bins,25Kb)
[Domain] X:137000000-147800000 (432 bins,25Kb)
[Domain] Y:13400000-17400000 (160 bins,25Kb)
[666] 4DNFIPTFHCFP: TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
 JuiceBox    Domain Calling   Browse 
Human (hg38); Hi-C
 		 
HiC
4DNFIPTFHCFP.hic (8.43 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
















































failed 
[Domain] X:1605000-2620000 (41 bins,25Kb)
[Domain] X:25200000-38100000 (516 bins,25Kb)
[Domain] X:30700000-38200000 (300 bins,25Kb)
[Domain] X:49600000-53000000 (136 bins,25Kb)
[Domain] X:62000000-85000000 (920 bins,25Kb)
[Domain] X:120300000-129400000 (364 bins,25Kb)
[Domain] X:137000000-147800000 (432 bins,25Kb)
[Domain] Y:13400000-17300000 (156 bins,25Kb)
 Supplements
[667] 4DNFIG6NF7VN.hic 
 4DNFIG6NF7VN: TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
 application/octet-stream 8.67 GB MD5: e535d565858848c1b1ac2cc8e4963d7f
[666] 4DNFIPTFHCFP.hic 
 4DNFIPTFHCFP: TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
 application/octet-stream 8.43 GB MD5: 4d9b098d2564dd32bac142379b8e106d