| Accession | GMS-65-21
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| Title | Liquified Chromatin Hi-C on K562 cells |
| Submit date | 2025-01-16 11:39:31 |
| Last update date | 2025-01-16 11:39:31 |
| Contact | GMSuite GENOMEMODALITY gmsuite AT hgc.jp The University of Tokyo |
| Sharing | |
| Total file size | 6.09 GB |
| Keywords | Hi-C 4DN contact matrix |
| Experiment type | in situ Hi-C |
| Summary | 4DNFIZBXXJAF Assay Details: DpnII Dataset: Liquified Chromatin Hi-C on K562 cells Condition: Purified nuclei, pre-digestion with DpnII for 3 hours, digestion with DpnII Notes: N/A Biosource: K562 (Tier 2) File Download URL: https://data.4dnucleome.org/files-processed/4DNFIZBXXJAF/@@download/4DNFIZBXXJAF.hic |
| Citation(s) | 4DNESLVTLWPX |
| Organism | Human |
| Cell (Tissue) | K562 |
| Protocol | 4DN_in_situ_Hi-C_protocol_20170729.pdf |
| Data processing | HiC Processing Pipeline - v0.3.0 |
| [467] | 4DNFIZBXXJAF: Purified nuclei, pre-digestion with DpnII for 3 hours, digestion with DpnII JuiceBox Domain Calling Browse Browse (All) Human (hg38); Hi-C |
 HiC 4DNFIZBXXJAF.hic (6.09 GB) Hi-C map is too sparse mCool Cooler-Tree |
