Information
Accession GMS-65-23 

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TitleLiquified Chromatin Hi-C on K562 cells
Submit date2025-01-16 11:43:59
Last update date2025-01-16 11:43:59
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
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Total file size5.35 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIJBJ6QVH
Assay Details: DpnII
Dataset: Liquified Chromatin Hi-C on K562 cells
Condition: Purified nuclei, pre-digestion with buffer for 4 hours, digestion with DpnII
Notes: N/A
Biosource: K562 (Tier 2)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIJBJ6QVH/@@download/4DNFIJBJ6QVH.hic

Citation(s) 4DNESQV6Y4JL
 Experiment
OrganismHuman
Cell (Tissue) K562
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[469] 4DNFIJBJ6QVH: Purified nuclei, pre-digestion with buffer for 4 hours, digestion with DpnII
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFIJBJ6QVH.hic (5.35 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)














































 Supplements
[469] 4DNFIJBJ6QVH.hic
 4DNFIJBJ6QVH: Purified nuclei, pre-digestion with buffer for 4 hours, digestion with DpnII
 application/octet-stream 5.35 GB MD5: 38fa25316b80d8d7a7bf2a3159e3fe88