Information
Accession GMS-65-25 

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TitleLiquified Chromatin Hi-C on K562 cells
Submit date2025-01-16 11:55:35
Last update date2025-01-16 11:55:35
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
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Total file size6.72 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIGXAMSJY
Assay Details: DpnII
Dataset: Liquified Chromatin Hi-C on K562 cells
Condition: Purified nuclei, pre-digestion with DpnII for 16 hours, digestion with DpnII
Notes: N/A
Biosource: K562 (Tier 2)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIGXAMSJY/@@download/4DNFIGXAMSJY.hic
Citation(s) 4DNESSH9ICEW
 Experiment
OrganismHuman
Cell (Tissue) K562
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[471] 4DNFIGXAMSJY: Purified nuclei, pre-digestion with DpnII for 16 hours, digestion with DpnII
 JuiceBox    Domain Calling   Browse  Browse (All)
Human (hg38); Hi-C
 		 
HiC
4DNFIGXAMSJY.hic (6.72 GB)  
 Hi-C map is too sparse
 mCool
 Cooler-Tree
 Supplements
[471] 4DNFIGXAMSJY.hic 
 4DNFIGXAMSJY: Purified nuclei, pre-digestion with DpnII for 16 hours, digestion with DpnII
 application/octet-stream 6.72 GB MD5: f9f7bcbdc26e2acbf03f094f5e03dc2c