| Accession | GMS-65-3
URL copied to the clipboard |
| Title | Degradation of RAD21 in HCT-116 |
| Submit date | 2023-05-29 15:56:40 |
| Last update date | 2023-05-29 15:54:56 |
| Contact | GMSuite GENOMEMODALITY gmsuite AT hgc.jp The University of Tokyo |
| Sharing | |
| Total file size | 1.88 GB |
| Keywords | Cohesin ChIP-seq Micro-C EU-seq RAD21 |
| Experiment type | An auxin-inducible degron system destroys RAD21 in HCT-116 cell line. RAD21 is a core component of the cohesin complex.HCT-116 is a human colorectal carcinoma cell line. Auxin (IAA) treated samples. |
| Summary | After Auxin (IAA) Treatment ChIP-seq AFF4, BRD4, CBP, CDK9, MAU2, MED1, NCBP1, NELFCD, RPB1, RAD21, S2P, SPT4, TAF1, TBP, P300, H3K27ac, H3K4me1 EU-seq in vivo 5-ethynyluridine (EU) labeling of nascent transcripts Micro-C |
| Citation(s) |
| Organism | Human |
| Cell (Tissue) | HCT116 |
| Protocol | |
| Data processing |
| [390] | EU-seq (IAA treated, Rep1) Browse Browse (All) Human (hg38); RNA-Seq |
 BAM accepted_hits.bam.sorted.bam (1.81 GB) |
| [356] | AFF4 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW AFF4_np1_peaks.narrowPeak.scaled.bigwig (530.03 KB) |
| [359] | BRD4 narrow peaks in HCT-116 (IAA treated) Browse Human (hg38); ChIP-Seq |
BW BRD4_np1_peaks.narrowPeak.scaled.bigwig (3.35 MB) |
| [362] | CBP narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW CBP_np1_peaks.narrowPeak.scaled.bigwig (2.46 MB) |
| [364] | CDK9 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW CDK9_np1_peaks.narrowPeak.scaled.bigwig (1.82 MB) |
| [387] | H3K27ac narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW H3K27ac_np1_peaks.narrowPeak.scaled.bigwig (6.00 MB) |
| [388] | H3K4me1 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW H3K4me1_np1_peaks.narrowPeak.scaled.bigwig (8.00 MB) |
| [363] | MAU2 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW MAU2_np1_peaks.narrowPeak.scaled.bigwig (395.77 KB) |
| [366] | MED1 narrow peaks (IAA treated, rep1) Browse Human (hg38); ChIP-Seq |
BW MED1_np1_peaks.narrowPeak.scaled.bigwig (3.38 MB) |
| [365] | MED1 narrow peaks (IAA treated, rep2) Browse Human (hg38); ChIP-Seq |
BW MED1_np2_peaks.narrowPeak.scaled.bigwig (2.23 MB) |
| [375] | NCBP1 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW NCBP1_np1_peaks.narrowPeak.scaled.bigwig (1.63 MB) |
| [377] | NELFCD narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW NELFCD_np1_peaks.narrowPeak.scaled.bigwig (2.16 MB) |
| [376] | P300 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW P300_np1_peaks.narrowPeak.scaled.bigwig (1.87 MB) |
| [383] | RPB1 narrow peaks (IAA treated, rep1) Browse Human (hg38); ChIP-Seq |
BW RPB1_np1_peaks.narrowPeak.scaled.bigwig (11.92 MB) |
| [381] | RPB1 narrow peaks (IAA treated, rep2) Browse Human (hg38); ChIP-Seq |
BW RPB1_np2_peaks.narrowPeak.scaled.bigwig (7.01 MB) |
| [382] | S2P narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW S2P_np1_peaks.narrowPeak.scaled.bigwig (9.17 MB) |
| [384] | SPT4 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW SPT4_np1_peaks.narrowPeak.scaled.bigwig (7.25 MB) |
| [378] | TAF1 narrow peaks (IAA treated) Browse Human (hg38); ChIP-Seq |
BW TAF1_np1_peaks.narrowPeak.scaled.bigwig (2.75 MB) |
| [379] | TBP narrow peaks (IAA treated, rep1) Browse Human (hg38); ChIP-Seq |
BW TBP_np1_peaks.narrowPeak.scaled.bigwig (3.13 MB) |
| [380] | TBP narrow peaks (IAA treated, rep2) Browse Human (hg38); ChIP-Seq |
BW TBP_np2_peaks.narrowPeak.scaled.bigwig (3.04 MB) |
| [390] accepted_hits.bam.sorted.bam
EU-seq (IAA treated, Rep1) application/octet-stream 1.81 GB MD5: f2a8e2cc80d5190370646f88d34aabf5 |
| [356] AFF4_np1_peaks.narrowPeak.scaled.bigwig
AFF4 narrow peaks (IAA treated) application/octet-stream 530.03 KB MD5: 3a15813fe609551fa9375c3af28e1b4b |
| [359] BRD4_np1_peaks.narrowPeak.scaled.bigwig
BRD4 narrow peaks in HCT-116 (IAA treated) application/octet-stream 3.35 MB MD5: ed6f68db234d9a9f03410138e16af102 |
| [362] CBP_np1_peaks.narrowPeak.scaled.bigwig
CBP narrow peaks (IAA treated) application/octet-stream 2.46 MB MD5: f6886a970a3829b0a54aa3f2be58b638 |
| [364] CDK9_np1_peaks.narrowPeak.scaled.bigwig
CDK9 narrow peaks (IAA treated) application/octet-stream 1.82 MB MD5: c953798eff2948909ad63de4d0f1c1c1 |
| [387] H3K27ac_np1_peaks.narrowPeak.scaled.bigwig
H3K27ac narrow peaks (IAA treated) application/octet-stream 6.00 MB MD5: 99e14d3c29ffabf5060cb2ab3ad0ddbf |
| [388] H3K4me1_np1_peaks.narrowPeak.scaled.bigwig
H3K4me1 narrow peaks (IAA treated) application/octet-stream 8.00 MB MD5: 206b58313e4b6e786faba73e5d98f786 |
| [363] MAU2_np1_peaks.narrowPeak.scaled.bigwig
MAU2 narrow peaks (IAA treated) application/octet-stream 395.77 KB MD5: 49881dedd458e926a92b443c44bfc171 |
| [366] MED1_np1_peaks.narrowPeak.scaled.bigwig
MED1 narrow peaks (IAA treated, rep1) application/octet-stream 3.38 MB MD5: e301384f20ad868b1c92d6ea11000288 |
| [365] MED1_np2_peaks.narrowPeak.scaled.bigwig
MED1 narrow peaks (IAA treated, rep2) application/octet-stream 2.23 MB MD5: c5333373b109b90a439c99cc71fc0170 |
| [375] NCBP1_np1_peaks.narrowPeak.scaled.bigwig
NCBP1 narrow peaks (IAA treated) application/octet-stream 1.63 MB MD5: 87d3214c010102b29ddbb919b3329964 |
| [377] NELFCD_np1_peaks.narrowPeak.scaled.bigwig
NELFCD narrow peaks (IAA treated) application/octet-stream 2.16 MB MD5: 2485640bb917c35a333923ae5918b0fa |
| [376] P300_np1_peaks.narrowPeak.scaled.bigwig
P300 narrow peaks (IAA treated) application/octet-stream 1.87 MB MD5: 1abed88db85d2e4e5ffc9e8a37047ae3 |
| [383] RPB1_np1_peaks.narrowPeak.scaled.bigwig
RPB1 narrow peaks (IAA treated, rep1) application/octet-stream 11.92 MB MD5: f55d40c96229979003c13d943cdd4700 |
| [381] RPB1_np2_peaks.narrowPeak.scaled.bigwig
RPB1 narrow peaks (IAA treated, rep2) application/octet-stream 7.01 MB MD5: b95ca6cbe16dd34d8c1e84e0046a9dd1 |
| [382] S2P_np1_peaks.narrowPeak.scaled.bigwig
S2P narrow peaks (IAA treated) application/octet-stream 9.17 MB MD5: 2004a9f54c271d81832b194ac815981f |
| [384] SPT4_np1_peaks.narrowPeak.scaled.bigwig
SPT4 narrow peaks (IAA treated) application/octet-stream 7.25 MB MD5: 3718fbedf9095dc625ebabbea1ec5474 |
| [378] TAF1_np1_peaks.narrowPeak.scaled.bigwig
TAF1 narrow peaks (IAA treated) application/octet-stream 2.75 MB MD5: 72e870b15ff4f642c79655bb93dcebb4 |
| [379] TBP_np1_peaks.narrowPeak.scaled.bigwig
TBP narrow peaks (IAA treated, rep1) application/octet-stream 3.13 MB MD5: b198517faf80cd1d42548abdf2107dd3 |
| [380] TBP_np2_peaks.narrowPeak.scaled.bigwig
TBP narrow peaks (IAA treated, rep2) application/octet-stream 3.04 MB MD5: d79b35831fc7638902a85fb1c7d11f7f |
