GM Suite

Information
Accession	GMS-65-38 URL copied to the clipboard
Title	Hi-C on H1 cells
Submit date	2025-01-17 11:44:32
Last update date	2025-01-17 11:44:32
Contact	GMSuite GENOMEMODALITY gmsuite AT hgc.jp The University of Tokyo
Sharing
Total file size	7.34 GB
Keywords	Hi-C 4DN contact matrix

Study
Experiment type	in situ Hi-C
Summary	4DNFI6Z3L9J7 Assay Details: Arima - A1, A2 Dataset: Hi-C on H1 cells Condition: No treatment control Notes: N/A Biosource: H1-hESC (Tier 1) File Download URL: https://data.4dnucleome.org/files-processed/4DNFI6Z3L9J7/@@download/4DNFI6Z3L9J7.hic 4DNFID162B9J Assay Details: Arima - A1, A2 Dataset: Hi-C on H1 cells Condition: No treatment control Notes: N/A Biosource: H1-hESC (Tier 1) File Download URL: https://data.4dnucleome.org/files-processed/4DNFID162B9J/@@download/4DNFID162B9J.hic
Citation(s)	4DNESFSCP5L8

Experiment
Organism	Human
Cell (Tissue)	H1-hESC
Protocol	4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing	HiC Processing Pipeline - v0.3.0

Analysis
[485]	4DNFI6Z3L9J7: No treatment control JuiceBox Domain Calling Browse Browse (All) Human (hg38); Hi-C	4DNFI6Z3L9J7.hic (3.63 GB) mCool Cooler-Tree PHi-C2 (polymer dynamics modeling) failed [Domain] 1:2100000-3600000 (60 bins,25Kb) [Domain] 1:12200000-13900000 (68 bins,25Kb) [Domain] 1:89000000-108000000 (760 bins,25Kb) [Domain] 1:109000000-121500000 (500 bins,25Kb) [Domain] 1:213000000-222900000 (396 bins,25Kb) [Domain] 1:236000000-248900000 (516 bins,25Kb) [Domain] 2:105500000-108600000 (124 bins,25Kb) [Domain] 3:160800000-165100000 (172 bins,25Kb) [Domain] 3:194400000-195900000 (60 bins,25Kb) [Domain] 4:57000000-62700000 (228 bins,25Kb) [Domain] 4:186300000-190000000 (148 bins,25Kb) [Domain] 5:16600000-18200000 (64 bins,25Kb) [Domain] 5:16700000-23100000 (256 bins,25Kb) [Domain] 6:26000000-29000000 (120 bins,25Kb) [Domain] 6:60200000-63300000 (124 bins,25Kb) [Domain] 6:75700000-78900000 (128 bins,25Kb) [Domain] 6:93200000-95100000 (76 bins,25Kb) [Domain] 6:166600000-170600000 (160 bins,25Kb) [Domain] 6:168300000-170700000 (96 bins,25Kb) [Domain] 7:56075000-58100000 (81 bins,25Kb) [Domain] 7:62500000-64775000 (91 bins,25Kb) [Domain] 7:77000000-97000000 (800 bins,25Kb) [Domain] 11:70200000-71700000 (60 bins,25Kb) [Domain] 13:110500000-114300000 (152 bins,25Kb) [Domain] 16:70300000-71800000 (60 bins,25Kb) [Domain] 19:5700000-10000000 (172 bins,25Kb) [Domain] 19:45300000-49400000 (164 bins,25Kb) [Domain] 19:49900000-53700000 (152 bins,25Kb) [Domain] 21:33900000-36300000 (96 bins,25Kb) [Domain] X:20000000-38000000 (720 bins,25Kb) [Domain] X:34400000-38100000 (148 bins,25Kb) [Domain] X:51000000-52900000 (76 bins,25Kb) [Domain] X:101600000-103000000 (56 bins,25Kb) [Domain] X:112700000-114900000 (88 bins,25Kb) [Domain] X:120500000-123500000 (120 bins,25Kb) [Domain] X:141100000-143700000 (104 bins,25Kb) [Domain] X:143600000-145200000 (64 bins,25Kb) [Domain] X:148100000-149700000 (64 bins,25Kb) [Domain] X:151100000-152800000 (68 bins,25Kb) [Domain] X:154890000-156000000 (45 bins,25Kb)
[501]	4DNFID162B9J: No treatment control JuiceBox Domain Calling Browse Human (hg38); Hi-C	4DNFID162B9J.hic (3.72 GB) mCool Cooler-Tree PHi-C2 (polymer dynamics modeling) failed [Domain] 1:12100000-16100000 (160 bins,25Kb) [Domain] 1:88000000-108000000 (800 bins,25Kb) [Domain] 3:160800000-165100000 (172 bins,25Kb) [Domain] 4:8700000-9900000 (48 bins,25Kb) [Domain] 4:57000000-62700000 (228 bins,25Kb) [Domain] 5:16500000-23500000 (280 bins,25Kb) [Domain] 6:26000000-29000000 (120 bins,25Kb) [Domain] 6:60225000-61650000 (57 bins,25Kb) [Domain] 6:75700000-79800000 (164 bins,25Kb) [Domain] 6:93200000-95100000 (76 bins,25Kb) [Domain] 6:166700000-170700000 (160 bins,25Kb) [Domain] 7:62525000-64775000 (90 bins,25Kb) [Domain] 8:8200000-12500000 (172 bins,25Kb) [Domain] 18:850000-2400000 (62 bins,25Kb) [Domain] 18:7100000-8500000 (56 bins,25Kb) [Domain] 18:9600000-12100000 (100 bins,25Kb) [Domain] 18:63900000-65700000 (72 bins,25Kb) [Domain] 18:63975000-65775000 (72 bins,25Kb) [Domain] 18:67200000-68725000 (61 bins,25Kb) [Domain] 18:68800000-70450000 (66 bins,25Kb) [Domain] 18:70500000-74100000 (144 bins,25Kb) [Domain] 19:36100000-37800000 (68 bins,25Kb) [Domain] 21:34200000-36300000 (84 bins,25Kb) [Domain] X:3900000-7900000 (160 bins,25Kb) [Domain] X:20000000-37000000 (680 bins,25Kb) [Domain] X:34400000-38100000 (148 bins,25Kb) [Domain] X:38500000-40500000 (80 bins,25Kb) [Domain] X:41500000-43775000 (91 bins,25Kb) [Domain] X:49600000-52600000 (120 bins,25Kb) [Domain] X:50900000-52900000 (80 bins,25Kb) [Domain] X:55100000-56700000 (64 bins,25Kb) [Domain] X:63700000-65500000 (72 bins,25Kb) [Domain] X:66700000-68100000 (56 bins,25Kb) [Domain] X:66750000-68150000 (56 bins,25Kb) [Domain] X:72900000-74300000 (56 bins,25Kb) [Domain] X:73000000-87000000 (560 bins,25Kb) [Domain] X:85500000-87200000 (68 bins,25Kb) [Domain] X:85575000-87300000 (69 bins,25Kb) [Domain] X:88000000-91700000 (148 bins,25Kb) [Domain] X:91800000-94700000 (116 bins,25Kb) [Domain] X:93600000-94800000 (48 bins,25Kb) [Domain] X:96300000-100600000 (172 bins,25Kb) [Domain] X:101300000-103800000 (100 bins,25Kb) [Domain] X:104200000-106700000 (100 bins,25Kb) [Domain] X:108100000-109800000 (68 bins,25Kb) [Domain] X:112700000-114900000 (88 bins,25Kb) [Domain] X:115900000-118200000 (92 bins,25Kb) [Domain] X:120500000-123500000 (120 bins,25Kb) [Domain] X:124300000-129300000 (200 bins,25Kb) [Domain] X:126725000-129375000 (106 bins,25Kb) [Domain] X:130200000-131700000 (60 bins,25Kb) [Domain] X:140400000-145100000 (188 bins,25Kb) [Domain] X:143600000-145200000 (64 bins,25Kb) [Domain] X:145800000-147800000 (80 bins,25Kb) [Domain] X:146225000-147850000 (65 bins,25Kb) [Domain] X:147900000-149600000 (68 bins,25Kb) [Domain] X:151100000-152800000 (68 bins,25Kb) [Domain] X:154880000-156000000 (45 bins,25Kb)

Supplements
[485] 4DNFI6Z3L9J7.hic 4DNFI6Z3L9J7: No treatment control application/octet-stream 3.63 GB MD5: a98c5e2f83ee1b37bc3e30abd8fac084
[501] 4DNFID162B9J.hic 4DNFID162B9J: No treatment control application/octet-stream 3.72 GB MD5: 69a56be15c53eef4639ab963138ef272