Information
Accession GMS-65-39 

URL copied to the clipboard

TitleHi-C on H1 cells
Submit date2025-01-17 12:55:57
Last update date2025-01-17 12:55:57
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
Sharing
Total file size7.59 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI2LTNXME
Assay Details: Arima - A1, A2
Dataset: Hi-C on H1 cells
Condition: Ammonium acetate
Notes: N/A
Biosource: H1-hESC (Tier 1)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI2LTNXME/@@download/4DNFI2LTNXME.hic

4DNFIFWJJC63
Assay Details: Arima - A1, A2
Dataset: Hi-C on H1 cells
Condition: Ammonium acetate
Notes: N/A
Biosource: H1-hESC (Tier 1)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIFWJJC63/@@download/4DNFIFWJJC63.hic

Citation(s) 4DNES2253IBO
 Experiment
OrganismHuman
Cell (Tissue) H1-hESC
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[486] 4DNFI2LTNXME: Ammonium acetate
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFI2LTNXME.hic (3.84 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
















































failed 
[Domain] 1:12100000-15400000 (132 bins,25Kb)
[Domain] 1:88000000-108000000 (800 bins,25Kb)
[Domain] 3:160800000-165100000 (172 bins,25Kb)
[Domain] 4:8600000-10000000 (56 bins,25Kb)
[Domain] 4:57000000-60600000 (144 bins,25Kb)
[Domain] 6:26000000-29000000 (120 bins,25Kb)
[Domain] 6:60225000-61700000 (59 bins,25Kb)
[Domain] 6:75800000-78800000 (120 bins,25Kb)
[Domain] 6:93300000-95100000 (72 bins,25Kb)
[Domain] 6:166500000-170700000 (168 bins,25Kb)
[Domain] 7:55800000-64800000 (360 bins,25Kb)
[Domain] 7:62525000-64850000 (93 bins,25Kb)
[Domain] 8:8200000-12500000 (172 bins,25Kb)
[Domain] 11:70300000-71700000 (56 bins,25Kb)
[Domain] 13:85900000-87300000 (56 bins,25Kb)
[Domain] 13:110500000-114300000 (152 bins,25Kb)
[Domain] 15:82500000-85100000 (104 bins,25Kb)
[Domain] 16:16500000-18300000 (72 bins,25Kb)
[Domain] 18:850000-2200000 (54 bins,25Kb)
[Domain] 18:9800000-11900000 (84 bins,25Kb)
[Domain] 18:27700000-29800000 (84 bins,25Kb)
[Domain] 18:27800000-31500000 (148 bins,25Kb)
[Domain] 18:33200000-35000000 (72 bins,25Kb)
[Domain] 18:36900000-45600000 (348 bins,25Kb)
[Domain] 18:46200000-50300000 (164 bins,25Kb)
[Domain] 18:59500000-62200000 (108 bins,25Kb)
[Domain] 18:63900000-65700000 (72 bins,25Kb)
[Domain] 18:63975000-65750000 (71 bins,25Kb)
[Domain] 18:67100000-68700000 (64 bins,25Kb)
[Domain] 18:67200000-68725000 (61 bins,25Kb)
[Domain] 18:68800000-70400000 (64 bins,25Kb)
[Domain] 18:70500000-74100000 (144 bins,25Kb)
[Domain] 19:36100000-37800000 (68 bins,25Kb)
[Domain] 19:49900000-53600000 (148 bins,25Kb)
[Domain] 21:33900000-36300000 (96 bins,25Kb)
[Domain] X:1590000-2625000 (42 bins,25Kb)
[Domain] X:20000000-38000000 (720 bins,25Kb)
[Domain] X:49700000-53100000 (136 bins,25Kb)
[Domain] X:72900000-74300000 (56 bins,25Kb)
[Domain] X:101300000-103600000 (92 bins,25Kb)
[Domain] X:112700000-114900000 (88 bins,25Kb)
[Domain] X:120500000-123500000 (120 bins,25Kb)
[Domain] X:151100000-153300000 (88 bins,25Kb)
[Domain] Y:5000000-6800000 (72 bins,25Kb)
[Domain] Y:14600000-16400000 (72 bins,25Kb)

[502] 4DNFIFWJJC63: Ammonium acetate
 JuiceBox  Domain CallingBrowse
Human (hg38); Hi-C

HiC

4DNFIFWJJC63.hic (3.76 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
















































failed 
[Domain] 1:12100000-13900000 (72 bins,25Kb)
[Domain] 1:88000000-108000000 (800 bins,25Kb)
[Domain] 2:106600000-108200000 (64 bins,25Kb)
[Domain] 3:160800000-165200000 (176 bins,25Kb)
[Domain] 4:56900000-62700000 (232 bins,25Kb)
[Domain] 4:186300000-190000000 (148 bins,25Kb)
[Domain] 5:18300000-21700000 (136 bins,25Kb)
[Domain] 6:26000000-29000000 (120 bins,25Kb)
[Domain] 6:60200000-63300000 (124 bins,25Kb)
[Domain] 6:75800000-78800000 (120 bins,25Kb)
[Domain] 6:93300000-95100000 (72 bins,25Kb)
[Domain] 6:166500000-170600000 (164 bins,25Kb)
[Domain] 7:56075000-58100000 (81 bins,25Kb)
[Domain] 7:62500000-64750000 (90 bins,25Kb)
[Domain] 7:65600000-67000000 (56 bins,25Kb)
[Domain] 9:10000000-12600000 (104 bins,25Kb)
[Domain] 9:15800000-17400000 (64 bins,25Kb)
[Domain] 9:15825000-17475000 (66 bins,25Kb)
[Domain] 9:22300000-26800000 (180 bins,25Kb)
[Domain] 9:27500000-32500000 (200 bins,25Kb)
[Domain] 9:70000000-85000000 (600 bins,25Kb)
[Domain] 9:84300000-85700000 (56 bins,25Kb)
[Domain] 9:87950000-89300000 (54 bins,25Kb)
[Domain] 9:93000000-97300000 (172 bins,25Kb)
[Domain] 9:98000000-122000000 (960 bins,25Kb)
[Domain] 9:121200000-127100000 (236 bins,25Kb)
[Domain] 13:85900000-87300000 (56 bins,25Kb)
[Domain] 15:82500000-85000000 (100 bins,25Kb)
[Domain] 18:46200000-50300000 (164 bins,25Kb)
[Domain] 19:5700000-10000000 (172 bins,25Kb)
[Domain] 19:36100000-37800000 (68 bins,25Kb)
[Domain] 19:49900000-53600000 (148 bins,25Kb)
[Domain] 21:33900000-36300000 (96 bins,25Kb)
[Domain] X:1590000-2625000 (42 bins,25Kb)
[Domain] X:51000000-53000000 (80 bins,25Kb)
[Domain] X:101500000-103100000 (64 bins,25Kb)
[Domain] X:112700000-114900000 (88 bins,25Kb)
[Domain] X:120500000-123500000 (120 bins,25Kb)
[Domain] X:140700000-143600000 (116 bins,25Kb)
[Domain] X:148100000-149700000 (64 bins,25Kb)
[Domain] X:151100000-152900000 (72 bins,25Kb)
[Domain] Y:14600000-16400000 (72 bins,25Kb)

 Supplements
[486] 4DNFI2LTNXME.hic
 4DNFI2LTNXME: Ammonium acetate
 application/octet-stream 3.84 GB MD5: 3275c55cc5d89aa136352ac971c97bdb
[502] 4DNFIFWJJC63.hic
 4DNFIFWJJC63: Ammonium acetate
 application/octet-stream 3.76 GB MD5: b56d179efbca6babf8785007f164f18c