Information
Accession GMS-65-40 

URL copied to the clipboard

TitleHi-C on H1 cells
Submit date2025-01-17 13:00:51
Last update date2025-01-17 13:00:51
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
Sharing
Total file size9.88 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFISLZ9FR1
Assay Details: Arima - A1, A2
Dataset: Hi-C on H1 cells
Condition: RNaseA
Notes: N/A
Biosource: H1-hESC (Tier 1)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFISLZ9FR1/@@download/4DNFISLZ9FR1.hic

4DNFIC3JD6O2
Assay Details: Arima - A1, A2
Dataset: Hi-C on H1 cells
Condition: RNaseA
Notes: N/A
Biosource: H1-hESC (Tier 1)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIC3JD6O2/@@download/4DNFIC3JD6O2.hic

Citation(s) 4DNES4AABNEZ
 Experiment
OrganismHuman
Cell (Tissue) H1-hESC
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[503] 4DNFIC3JD6O2: RNaseA
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFIC3JD6O2.hic (5.04 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
















































failed 
[Domain] 1:12100000-15400000 (132 bins,25Kb)
[Domain] 1:103700000-107700000 (160 bins,25Kb)
[Domain] 1:109000000-121500000 (500 bins,25Kb)
[Domain] 1:226100000-231200000 (204 bins,25Kb)
[Domain] 2:86200000-88600000 (96 bins,25Kb)
[Domain] 2:110600000-112600000 (80 bins,25Kb)
[Domain] 2:127300000-130900000 (144 bins,25Kb)
[Domain] 3:161400000-167400000 (240 bins,25Kb)
[Domain] 4:57000000-62700000 (228 bins,25Kb)
[Domain] 5:16700000-18300000 (64 bins,25Kb)
[Domain] 5:17210000-18320000 (45 bins,25Kb)
[Domain] 6:26000000-28900000 (116 bins,25Kb)
[Domain] 6:75700000-79800000 (164 bins,25Kb)
[Domain] 6:90500000-95100000 (184 bins,25Kb)
[Domain] 6:166300000-170700000 (176 bins,25Kb)
[Domain] 7:62525000-64750000 (89 bins,25Kb)
[Domain] 7:73100000-76300000 (128 bins,25Kb)
[Domain] 8:8200000-12500000 (172 bins,25Kb)
[Domain] 8:85100000-86400000 (52 bins,25Kb)
[Domain] 19:50000000-54100000 (164 bins,25Kb)
[Domain] X:49800000-52500000 (108 bins,25Kb)
[Domain] X:51000000-52900000 (76 bins,25Kb)
[Domain] X:101400000-103000000 (64 bins,25Kb)
[Domain] X:112700000-114900000 (88 bins,25Kb)
[Domain] X:120500000-123500000 (120 bins,25Kb)
[Domain] X:129900000-135500000 (224 bins,25Kb)
[Domain] X:140700000-145200000 (180 bins,25Kb)
[Domain] X:154900000-156000000 (44 bins,25Kb)
[Domain] Y:5000000-6800000 (72 bins,25Kb)
[Domain] Y:14600000-16500000 (76 bins,25Kb)

[487] 4DNFISLZ9FR1: RNaseA
 JuiceBox  Domain CallingBrowse
Human (hg38); Hi-C

HiC

4DNFISLZ9FR1.hic (4.85 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)
















































failed 
[Domain] 1:23800000-26000000 (88 bins,25Kb)
[Domain] 1:41000000-42700000 (68 bins,25Kb)
[Domain] 1:48100000-51200000 (124 bins,25Kb)
[Domain] 1:59900000-61900000 (80 bins,25Kb)
[Domain] 1:68100000-70100000 (80 bins,25Kb)
[Domain] 1:71100000-74700000 (144 bins,25Kb)
[Domain] 1:74750000-75800000 (42 bins,25Kb)
[Domain] 1:78700000-83800000 (204 bins,25Kb)
[Domain] 1:85250000-86325000 (43 bins,25Kb)
[Domain] 1:90000000-92800000 (112 bins,25Kb)
[Domain] 1:95000000-99700000 (188 bins,25Kb)
[Domain] 1:99775000-100875000 (44 bins,25Kb)
[Domain] 1:99800000-101200000 (56 bins,25Kb)
[Domain] 1:168200000-171400000 (128 bins,25Kb)
[Domain] 1:214600000-222600000 (320 bins,25Kb)
[Domain] 1:226300000-228500000 (88 bins,25Kb)
[Domain] 1:236000000-248900000 (516 bins,25Kb)
[Domain] 2:105200000-106500000 (52 bins,25Kb)
[Domain] 2:105300000-108600000 (132 bins,25Kb)
[Domain] 3:161400000-167400000 (240 bins,25Kb)
[Domain] 4:57000000-62700000 (228 bins,25Kb)
[Domain] 4:186300000-190000000 (148 bins,25Kb)
[Domain] 5:16700000-18200000 (60 bins,25Kb)
[Domain] 5:17210000-18320000 (45 bins,25Kb)
[Domain] 5:170300000-181200000 (436 bins,25Kb)
[Domain] 6:26000000-28900000 (116 bins,25Kb)
[Domain] 6:60200000-63400000 (128 bins,25Kb)
[Domain] 6:75800000-78900000 (124 bins,25Kb)
[Domain] 6:90500000-95100000 (184 bins,25Kb)
[Domain] 6:166300000-170600000 (172 bins,25Kb)
[Domain] 7:56100000-58100000 (80 bins,25Kb)
[Domain] 7:62525000-64750000 (89 bins,25Kb)
[Domain] 8:85100000-86400000 (52 bins,25Kb)
[Domain] 11:61000000-76000000 (600 bins,25Kb)
[Domain] 13:53000000-72000000 (760 bins,25Kb)
[Domain] 19:49900000-54200000 (172 bins,25Kb)
[Domain] X:1590000-2625000 (42 bins,25Kb)
[Domain] X:49800000-52900000 (124 bins,25Kb)
[Domain] X:101400000-103175000 (71 bins,25Kb)
[Domain] X:112700000-114900000 (88 bins,25Kb)
[Domain] X:120500000-123500000 (120 bins,25Kb)
[Domain] X:140700000-143300000 (104 bins,25Kb)
[Domain] X:154900000-156000000 (44 bins,25Kb)
[Domain] Y:14700000-17300000 (104 bins,25Kb)

 Supplements
[503] 4DNFIC3JD6O2.hic
 4DNFIC3JD6O2: RNaseA
 application/octet-stream 5.04 GB MD5: 8bfde6eb36c05bbb41dbc8d6b1e698b9
[487] 4DNFISLZ9FR1.hic
 4DNFISLZ9FR1: RNaseA
 application/octet-stream 4.85 GB MD5: c8237daf2ed29cbfa0e1f52dcac12dcb