Information
Accession GMS-65-41 

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TitleHi-C on H1 cells - protocol variations
Submit date2025-01-17 05:48:13
Last update date2025-01-17 05:48:13
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
Sharing
Total file size15.49 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFIIMZB6Y9
Assay Details: DpnII
Dataset: Hi-C on H1 cells - protocol variations
Condition: Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
Notes: N/A
Biosource: H1-hESC (Tier 1)
File Download URL: https://data.4dnucleome.org/files-processed/4DNFIIMZB6Y9/@@download/4DNFIIMZB6Y9.hic

Citation(s) 4DNESX75DD7R
 Experiment
OrganismHuman
Cell (Tissue) H1-hESC
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[488] 4DNFIIMZB6Y9: Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFIIMZB6Y9.hic (15.49 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)














































failed 
[Domain] 7:62515000-64765000 (90 bins,25Kb)
[Domain] 7:65600000-67100000 (60 bins,25Kb)
[Domain] 7:73000000-76300000 (132 bins,25Kb)
[Domain] 8:7400000-12500000 (204 bins,25Kb)
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[Domain] 9:69000000-85000000 (640 bins,25Kb)
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[Domain] X:34350000-37050000 (108 bins,25Kb)
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[Domain] X:55100000-56700000 (64 bins,25Kb)
[Domain] X:63700000-65500000 (72 bins,25Kb)
[Domain] X:65550000-66725000 (47 bins,25Kb)
[Domain] X:66700000-68100000 (56 bins,25Kb)
[Domain] X:66750000-68150000 (56 bins,25Kb)
[Domain] X:72700000-74300000 (64 bins,25Kb)
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[Domain] X:85500000-87300000 (72 bins,25Kb)
[Domain] X:87600000-94400000 (272 bins,25Kb)
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[Domain] X:96700000-100600000 (156 bins,25Kb)
[Domain] X:101200000-103100000 (76 bins,25Kb)
[Domain] X:101400000-103200000 (72 bins,25Kb)
[Domain] X:104100000-110000000 (236 bins,25Kb)
[Domain] X:111800000-114900000 (124 bins,25Kb)
[Domain] X:112750000-114975000 (89 bins,25Kb)
[Domain] X:115900000-118300000 (96 bins,25Kb)
[Domain] X:120300000-129300000 (360 bins,25Kb)
[Domain] X:125400000-129350000 (158 bins,25Kb)
[Domain] X:129600000-136800000 (288 bins,25Kb)
[Domain] X:138100000-149600000 (460 bins,25Kb)

 Supplements
[488] 4DNFIIMZB6Y9.hic
 4DNFIIMZB6Y9: Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
 application/octet-stream 15.49 GB MD5: eb354335dfaa98eedab3b6f8a932758d