Information
Accession GMS-65-45 

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TitleHi-C on GM12878 cells - protocol variations
Submit date2025-01-17 10:05:49
Last update date2025-01-17 10:05:49
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
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Total file size3.28 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI9YAVTI1
Assay Details: MboI
Dataset: Hi-C on GM12878 cells - protocol variations
Condition: in situ Hi-C on GM12878 with MboI and bio-dCTP (Tethered HiC)
Notes: N/A
Biosource: GM12878
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI9YAVTI1/@@download/4DNFI9YAVTI1.hic

Citation(s) 4DNESCIHJOXA
 Experiment
OrganismHuman
Cell (Tissue) GM12878
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[492] 4DNFI9YAVTI1: in situ Hi-C on GM12878 with MboI and bio-dCTP (Tethered HiC)
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFI9YAVTI1.hic (3.28 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)














































 Supplements
[492] 4DNFI9YAVTI1.hic
 4DNFI9YAVTI1: in situ Hi-C on GM12878 with MboI and bio-dCTP (Tethered HiC)
 application/octet-stream 3.28 GB MD5: 562bdff836baeb07703ef0d378654c4e