Information
Accession GMS-65-46 

URL copied to the clipboard

TitleHi-C on GM12878 cells - protocol variations
Submit date2025-01-17 10:05:53
Last update date2025-01-17 10:05:53
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
Sharing
Total file size3.01 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI5CGQ46V
Assay Details: MboI
Dataset: Hi-C on GM12878 cells - protocol variations
Condition: in situ Hi-C on GM12878 with MboI and bio-dCTP
Notes: N/A
Biosource: GM12878
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI5CGQ46V/@@download/4DNFI5CGQ46V.hic

Citation(s) 4DNESJFTAURO
 Experiment
OrganismHuman
Cell (Tissue) GM12878
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[493] 4DNFI5CGQ46V: in situ Hi-C on GM12878 with MboI and bio-dCTP
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFI5CGQ46V.hic (3.01 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)














































 Supplements
[493] 4DNFI5CGQ46V.hic
 4DNFI5CGQ46V: in situ Hi-C on GM12878 with MboI and bio-dCTP
 application/octet-stream 3.01 GB MD5: 28486d587381c893436ca07bb369b22e