Information
Accession GMS-65-47 

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TitleHi-C on GM12878 cells - protocol variations
Submit date2025-01-17 10:06:15
Last update date2025-01-17 10:06:15
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
Sharing
Total file size3.55 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI9ZWZ5BS
Assay Details: DpnII
Dataset: Hi-C on GM12878 cells - protocol variations
Condition: in situ Hi-C on GM12878 with DpnII and bio-dATP
Notes: N/A
Biosource: GM12878
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI9ZWZ5BS/@@download/4DNFI9ZWZ5BS.hic

Citation(s) 4DNESQWI9K2F
 Experiment
OrganismHuman
Cell (Tissue) GM12878
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[494] 4DNFI9ZWZ5BS: in situ Hi-C on GM12878 with DpnII and bio-dATP
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFI9ZWZ5BS.hic (3.55 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)














































failed 
[Domain] X:47100000-49200000 (84 bins,25Kb)
[Domain] X:51100000-53000000 (76 bins,25Kb)
[Domain] X:72200000-74100000 (76 bins,25Kb)
[Domain] X:152900000-154700000 (72 bins,25Kb)

 Supplements
[494] 4DNFI9ZWZ5BS.hic
 4DNFI9ZWZ5BS: in situ Hi-C on GM12878 with DpnII and bio-dATP
 application/octet-stream 3.55 GB MD5: 18638e7954b61f4e3e2569f9ccc2988b