Information
Accession GMS-65-50 

URL copied to the clipboard

TitleHi-C on GM12878 cells - protocol variations
Submit date2025-01-17 10:08:58
Last update date2025-01-17 10:08:58
Contact GMSuite GENOMEMODALITY
gmsuite AT hgc.jp
The University of Tokyo
Sharing
Total file size22.62 GB
Keywords Hi-C  4DN  contact matrix 
 Study
Experiment type in situ Hi-C
Summary 4DNFI1UEG1HD
Assay Details: MboI
Dataset: Hi-C on GM12878 cells - protocol variations
Condition: Preferred protocol - in situ Hi-C on GM12878 with MboI and bio-dATP
Notes: N/A
Biosource: GM12878
File Download URL: https://data.4dnucleome.org/files-processed/4DNFI1UEG1HD/@@download/4DNFI1UEG1HD.hic

Citation(s) 4DNES3JX38V5
 Experiment
OrganismHuman
Cell (Tissue) GM12878
Protocol 4DN_in_situ_Hi-C_protocol_20170729.pdf
Data processing HiC Processing Pipeline - v0.3.0
 Analysis
[497] 4DNFI1UEG1HD: Preferred protocol - in situ Hi-C on GM12878 with MboI and bio-dATP
 JuiceBox  Domain CallingBrowse  Browse (All)
Human (hg38); Hi-C

HiC

4DNFI1UEG1HD.hic (22.62 GB)  
 mCool
 Cooler-Tree


PHi-C2 (polymer dynamics modeling)














































failed 
[Domain] 6:25900000-29700000 (152 bins,25Kb)
[Domain] 6:160100000-170500000 (416 bins,25Kb)
[Domain] 6:160475000-170625000 (406 bins,25Kb)
[Domain] 7:72900000-77500000 (184 bins,25Kb)
[Domain] 7:142400000-144300000 (76 bins,25Kb)
[Domain] 8:8100000-12500000 (176 bins,25Kb)
[Domain] 9:68000000-83000000 (600 bins,25Kb)
[Domain] 9:78400000-83250000 (194 bins,25Kb)
[Domain] X:47100000-49200000 (84 bins,25Kb)
[Domain] X:47125000-49250000 (85 bins,25Kb)
[Domain] X:47600000-53000000 (216 bins,25Kb)
[Domain] X:72200000-74550000 (94 bins,25Kb)
[Domain] X:100000000-116000000 (640 bins,25Kb)
[Domain] X:120475000-123750000 (131 bins,25Kb)
[Domain] X:120500000-129300000 (352 bins,25Kb)
[Domain] X:123900000-140600000 (668 bins,25Kb)
[Domain] X:140700000-147800000 (284 bins,25Kb)
[Domain] X:152900000-154500000 (64 bins,25Kb)

 Supplements
[497] 4DNFI1UEG1HD.hic
 4DNFI1UEG1HD: Preferred protocol - in situ Hi-C on GM12878 with MboI and bio-dATP
 application/octet-stream 22.62 GB MD5: 41eedfe4633f7fd4fa3810bc924196bb