| Accession | GMS-65-51
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| Title | Hi-C on GM12878 cells - protocol variations |
| Submit date | 2025-01-17 10:14:00 |
| Last update date | 2025-01-17 10:14:00 |
| Contact | GMSuite GENOMEMODALITY gmsuite AT hgc.jp The University of Tokyo |
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| Total file size | 2.09 GB |
| Keywords | Hi-C 4DN contact matrix |
| Experiment type | in situ Hi-C |
| Summary | 4DNFIHKWIZ9T Assay Details: MboI Dataset: Hi-C on GM12878 cells - protocol variations Condition: in situ Hi-C on GM12878 with MboI and bio-dATP (in agar plugs, w/out crosslinking) Notes: N/A Biosource: GM12878 File Download URL: https://data.4dnucleome.org/files-processed/4DNFIHKWIZ9T/@@download/4DNFIHKWIZ9T.hic |
| Citation(s) | 4DNES4269GKX |
| Organism | Human |
| Cell (Tissue) | GM12878 |
| Protocol | 4DN_in_situ_Hi-C_protocol_20170729.pdf |
| Data processing | HiC Processing Pipeline - v0.3.0 |
| [498] | 4DNFIHKWIZ9T: in situ Hi-C on GM12878 with MboI and bio-dATP (in agar plugs, w/out crosslinking) JuiceBox Domain Calling Browse Browse (All) Human (hg38); Hi-C |
 HiC 4DNFIHKWIZ9T.hic (2.09 GB) Hi-C map is too sparse mCool Cooler-Tree |
