GM Suite

Data Browser

Sox2	1
Nucleosome	1
Simulation	1
Nanog gene	1
Transcription factor	1
Rna polymerase ii	1
Chromatin	1

Nuclear-scale 12

Cohesin	1
Micro-c	1
Disease	2
Cdls	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Development 2

Spermatogenesis	2
Primordial germ cell	2

Disease 15

Organoid	1
Sjogren's syndrome	1
Lymphoma	2
Cohesin	1
Micro-c	1
Cdls	2
Nuclear-scale	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Cell cycle 4

Chromatin motion	1
Interphase	1
Fractal polymer	1
Brownian dynamics	1

File Type 15

BAM	44
BED	2
BIGBED	2
BIGWIG	60
CIF	6
CRAM	4
HIC	219
JPG	4
MCOOL	10
MP4	20
PDB	1
PNG	11
TXT	3
WEBM	1
ZIP	1

Organism 2

Human - hg38	267
Mouse - mm10	74

Cell/Tissue 26

293FT	1
B cell	2
B cell derived cell line	5
Cerebellar granule neuron - 8 days old	11
CH12	2
Embryonic stem cell	1
ES-E14	3
ESC	1
Germinal Center B Cell	1
GM12878	9
H1-hESC	15
HAP-1	5
HCT116	12
Heart left atrium	4
Heart left ventricle	4
HeLa	2
HeLa-S3	60
HFF-hTERT	13
HUVEC cell	2
K562	19
Larcrimal gland	1
Naive B cell	1
Not applicable	5
Primordial germ cell	1
Sperm	1
WTC-11 differentiated to cardiac muscle cell	12

Keyword >> Spermatogenesis

Accession	File	RefGenome	Cell/Tissue	Keywords
GMS-64-82 Transcriptome and germ-cell development	`[692] E13.5_2.bam` E13.5 replicate 2 JBrowse `[761] expression_profile.txt` Gene expression profile (TPMs from E13.5 to SZ wit... `[735] transcriptome_changes.png` Gene expression clustering `[721] germcell_dev.png` RNA-seq mappability in germ-cell development `[712] P7.5_2.bam` P7.5 replicate 2 JBrowse `[711] P7.5_1.bam` P7.5 replicate 1 JBrowse `[710] P2.0_6.bam` P2.0 replicate 6 JBrowse `[709] P2.0_5.bam` P2.0 replicate 5 JBrowse `[708] P2.0_4.bam` P2.0 replicate 4 JBrowse `[707] P2.0_3.bam` P2.0 replicate 3 JBrowse `[706] P0.5_2.bam` P0.5 replicate 2 JBrowse `[705] P0.5_1.bam` P0.5 replicate 1 JBrowse `[704] E18.5_2.bam` E18.5 replicate 2 JBrowse `[702] E16.5_10.bam` E16.5 replicate 10 JBrowse `[693] E13.5_3.bam` E13.5 replicate 3 JBrowse `[691] E13.5_1.bam` E13.5 replicate 1 JBrowse `[703] E18.5_1.bam` E18.5 replicate 1 JBrowse `[694] E14.5_1.bam` E14.5 replicate 1 JBrowse `[695] E14.5_2.bam` E14.5 replicate 2 JBrowse `[696] E14.5_3.bam` E14.5 replicate 3 JBrowse `[697] E16.5_5.bam` E16.5 replicate 5 JBrowse `[698] E16.5_6.bam` E16.5 replicate 6 JBrowse `[699] E16.5_7.bam` E16.5 replicate 7 JBrowse `[700] E16.5_8.bam` E16.5 replicate 8 JBrowse `[701] E16.5_9.bam` E16.5 replicate 9 JBrowse	mm10	primordial germ cell	Spermatogenesis Development Primordial germ cell
GMS-64-83 Transcriptome and germ-cell development	`[743] transcriptome_changes.png` Gene expression clustering `[742] germcell_dev.png` RNA-seq mappability in germ-cell development `[740] MEF_2.bam` Mouse embryonic fibroblast (MEF) replicate 2 JBrowse `[739] MEF_1.bam` Mouse embryonic fibroblast (MEF) replicate 1 JBrowse `[738] SL_3.bam` Sertoli (SL) replicate 3 JBrowse `[737] SL_2.bam` Sertoli (SL) replicate 2 JBrowse `[736] SL_1.bam` Sertoli (SL) replicate 1 JBrowse `[762] expression_profile.txt` Gene expression profile (TPMs from E13.5 to SZ wit... `[734] SZ_3.bam` Spermatozoa (SZ) replicate 3 JBrowse `[733] SZ_2.bam` Spermatozoa (SZ) replicate 2 JBrowse `[732] SZ_1.bam` Spermatozoa (SZ) replicate 1 JBrowse `[731] SG_3.bam` Spermatogonia (SG) replicate 3 JBrowse `[730] SG_2.bam` Spermatogonia (SG) replicate 2 JBrowse `[728] SG_1.bam` Spermatogonia (SG) replicate 1 JBrowse `[727] SD_3.bam` Spermatids (SD) replicate 3 JBrowse `[726] SD_2.bam` Spermatids (SD) replicate 2 JBrowse `[725] SD_1.bam` Spermatids (SD) replicate 1 JBrowse `[724] SC_3.bam` Spermatocytes (SC) replicate 3 JBrowse `[723] SC_2.bam` Spermatocytes (SC) replicate 2 JBrowse `[722] SC_1.bam` Spermatocytes (SC) replicate 1 JBrowse		sperm	Spermatogenesis Development Primordial germ cell