GM Suite

Information
Accession	GMS-64-9 URL copied to the clipboard
Title	Smc3 and B-cell transit
Submit date	2023-12-22 17:08:17
Last update date	2024-01-04 15:48:10
Contact	Sung-Joon PARK park AT hgc.jp The University of Tokyo
Sharing
Total file size	4.34 GB
Keywords	Hi-C Lymphoma B cell

Study
Experiment type	Centrocytes from spleen https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4275413 NB: naive B cells CB: centroblasts CC: centrocytes PC: splenic plasma cells TPC: tonsillar plasma cells BMPC: bone marrow plasma cells
Summary	Smc3 regulates B-cell transit through germinal centers and restricts their malignant transformation
Citation(s)	https://pubmed.ncbi.nlm.nih.gov/33432228/

Experiment
Organism	Mouse
Cell (Tissue)	B Cell
Protocol	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4275413
Data processing	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4275413

Analysis
[1]	CB_WT_1 JuiceBox Domain Calling Browse Browse (All) Mouse (mm10); Hi-C	GSM4275413_CB-CTRL-DpnII-1.5000.mcool (459.46 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling) failed chr16:22000000-26000000 (10Kb)
[2]	CB_WT_2 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275414_CB-CTRL-DpnII-2.5000.mcool (434.17 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling) failed chr16:22000000-26000000 (10Kb)
[3]	CB_SMC3_1 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275415_CB-SMC3-DpnII-1.5000.mcool (500.88 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[4]	CB_SMC3_2 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275416_CB-SMC3-DpnII-2.5000.mcool (411.56 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[5]	CC_WT_1 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275417_CC-CTRL-DpnII-1.5000.mcool (449.61 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[6]	CC_WT_2 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275418_CC-CTRL-DpnII-2.5000.mcool (415.92 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[7]	CC_SMC3_1 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275419_CC-SMC3-DpnII-1.5000.mcool (432.35 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[8]	CC_SMC3_2 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275420_CC-SMC3-DpnII-2.5000.mcool (457.48 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[9]	NB_WT_1 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275421_NB-CTRL-DpnII-1.5000.mcool (397.32 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)
[10]	NB_WT_2 JuiceBox Domain Calling Browse Mouse (mm10); Hi-C	GSM4275422_NB-CTRL-DpnII-2.5000.mcool (382.04 MB) hic mCool Cooler-Tree PHi-C2 (polymer dynamics modeling)

Supplements
[442] GSM4275413_CB-CTRL-DpnII-1.5000.mcool CB_WT_1 application/octet-stream 459.46 MB MD5: d94526ad10437e7cbdcdecab4a43e35d
[447] GSM4275414_CB-CTRL-DpnII-2.5000.mcool CB_WT_2 application/octet-stream 434.17 MB MD5: 676afa0ae41828d13ae88fe231317541
[443] GSM4275415_CB-SMC3-DpnII-1.5000.mcool CB_SMC3_1 application/octet-stream 500.88 MB MD5: c47738d924882ff1204a6ee5217a83f7
[445] GSM4275416_CB-SMC3-DpnII-2.5000.mcool CB_SMC3_2 application/octet-stream 411.56 MB MD5: 7711276387631b293ddd5589e946a12d
[453] GSM4275417_CC-CTRL-DpnII-1.5000.mcool CC_WT_1 application/octet-stream 449.61 MB MD5: 2d1fadbfd0372684faa7de76e0e0facb
[451] GSM4275418_CC-CTRL-DpnII-2.5000.mcool CC_WT_2 application/octet-stream 415.92 MB MD5: 36999d830b1efe1097335487a87deb6e
[452] GSM4275419_CC-SMC3-DpnII-1.5000.mcool CC_SMC3_1 application/octet-stream 432.35 MB MD5: cd43a1b569c2a9844ccef3a50a561251
[454] GSM4275420_CC-SMC3-DpnII-2.5000.mcool CC_SMC3_2 application/octet-stream 457.48 MB MD5: f3156b0117fe0f146864a1fadf5ca481
[449] GSM4275421_NB-CTRL-DpnII-1.5000.mcool NB_WT_1 application/octet-stream 397.32 MB MD5: 7b85e7ff834034180fb4b68ea2b8858c
[450] GSM4275422_NB-CTRL-DpnII-2.5000.mcool NB_WT_2 application/octet-stream 382.04 MB MD5: 4fb2951ef3798ef5925263be688bed25