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GM Suite
 Information
Accession GMS-64-9 

URL copied to the clipboard
TitleSmc3 and B-cell transit
Submit date2023-12-22 17:08:17
Last update date2024-01-04 15:48:10
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size4.34 GB
Keywords Hi-C  Lymphoma  B cell 
 Study
Experiment type Centrocytes from spleen
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4275413
NB: naive B cells
CB: centroblasts
CC: centrocytes
PC: splenic plasma cells
TPC: tonsillar plasma cells
BMPC: bone marrow plasma cells
Summary Smc3 regulates B-cell transit through germinal centers and restricts their malignant transformation
Citation(s) https://pubmed.ncbi.nlm.nih.gov/33432228/
 Analysis
[1] CB_WT_1
JuiceBox  
GSM4275413_CB-CTRL-DpnII-1.5000.mcool (459.46 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)


failed 
chr16:22000000-26000000 (10Kb)
[2] CB_WT_2
JuiceBox  
GSM4275414_CB-CTRL-DpnII-2.5000.mcool (434.17 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)


failed 
chr16:22000000-26000000 (10Kb)
[3] CB_SMC3_1
JuiceBox  
GSM4275415_CB-SMC3-DpnII-1.5000.mcool (500.88 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[4] CB_SMC3_2
JuiceBox  
GSM4275416_CB-SMC3-DpnII-2.5000.mcool (411.56 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[5] CC_WT_1
JuiceBox  
GSM4275417_CC-CTRL-DpnII-1.5000.mcool (449.61 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[6] CC_WT_2
JuiceBox  
GSM4275418_CC-CTRL-DpnII-2.5000.mcool (415.92 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[7] CC_SMC3_1
JuiceBox  
GSM4275419_CC-SMC3-DpnII-1.5000.mcool (432.35 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[8] CC_SMC3_2
JuiceBox  
GSM4275420_CC-SMC3-DpnII-2.5000.mcool (457.48 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[9] NB_WT_1
JuiceBox  
GSM4275421_NB-CTRL-DpnII-1.5000.mcool (397.32 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
[10] NB_WT_2
JuiceBox  
GSM4275422_NB-CTRL-DpnII-2.5000.mcool (382.04 MB)
 Mouse (mm10); Hi-C
 		 
mcool 
HiC
 hic  mCool  Cooler-Tree

 Domain Calling



PHi-C2 (polymer dynamics modeling)
 Supplements
[442] GSM4275413_CB-CTRL-DpnII-1.5000.mcool 
 CB_WT_1
 application/octet-stream 459.46 MB MD5: d94526ad10437e7cbdcdecab4a43e35d
[447] GSM4275414_CB-CTRL-DpnII-2.5000.mcool 
 CB_WT_2
 application/octet-stream 434.17 MB MD5: 676afa0ae41828d13ae88fe231317541
[443] GSM4275415_CB-SMC3-DpnII-1.5000.mcool 
 CB_SMC3_1
 application/octet-stream 500.88 MB MD5: c47738d924882ff1204a6ee5217a83f7
[445] GSM4275416_CB-SMC3-DpnII-2.5000.mcool 
 CB_SMC3_2
 application/octet-stream 411.56 MB MD5: 7711276387631b293ddd5589e946a12d
[453] GSM4275417_CC-CTRL-DpnII-1.5000.mcool 
 CC_WT_1
 application/octet-stream 449.61 MB MD5: 2d1fadbfd0372684faa7de76e0e0facb
[451] GSM4275418_CC-CTRL-DpnII-2.5000.mcool 
 CC_WT_2
 application/octet-stream 415.92 MB MD5: 36999d830b1efe1097335487a87deb6e
[452] GSM4275419_CC-SMC3-DpnII-1.5000.mcool 
 CC_SMC3_1
 application/octet-stream 432.35 MB MD5: cd43a1b569c2a9844ccef3a50a561251
[454] GSM4275420_CC-SMC3-DpnII-2.5000.mcool 
 CC_SMC3_2
 application/octet-stream 457.48 MB MD5: f3156b0117fe0f146864a1fadf5ca481
[449] GSM4275421_NB-CTRL-DpnII-1.5000.mcool 
 NB_WT_1
 application/octet-stream 397.32 MB MD5: 7b85e7ff834034180fb4b68ea2b8858c
[450] GSM4275422_NB-CTRL-DpnII-2.5000.mcool 
 NB_WT_2
 application/octet-stream 382.04 MB MD5: 4fb2951ef3798ef5925263be688bed25