GM Suite

Data Browser

Sox2	1
Nucleosome	1
Simulation	1
Nanog gene	1
Transcription factor	1
Rna polymerase ii	1
Chromatin	1

Nuclear-scale 12

Cohesin	1
Micro-c	1
Disease	2
Cdls	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Development 2

Spermatogenesis	2
Primordial germ cell	2

Disease 15

Organoid	1
Sjogren's syndrome	1
Lymphoma	2
Cohesin	1
Micro-c	1
Cdls	2
Nuclear-scale	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Cell cycle 4

Chromatin motion	1
Interphase	1
Fractal polymer	1
Brownian dynamics	1

File Type 15

BAM	44
BED	2
BIGBED	2
BIGWIG	60
CIF	6
CRAM	4
HIC	219
JPG	4
MCOOL	10
MP4	20
PDB	1
PNG	11
TXT	3
WEBM	1
ZIP	1

Organism 2

Human - hg38	267
Mouse - mm10	74

Cell/Tissue 26

293FT	1
B cell	2
B cell derived cell line	5
Cerebellar granule neuron - 8 days old	11
CH12	2
Embryonic stem cell	1
ES-E14	3
ESC	1
Germinal Center B Cell	1
GM12878	9
H1-hESC	15
HAP-1	5
HCT116	12
Heart left atrium	4
Heart left ventricle	4
HeLa	2
HeLa-S3	60
HFF-hTERT	13
HUVEC cell	2
K562	19
Larcrimal gland	1
Naive B cell	1
Not applicable	5
Primordial germ cell	1
Sperm	1
WTC-11 differentiated to cardiac muscle cell	12

Keyword >> Lymphoma

Accession	File	RefGenome	Cell/Tissue	Keywords
GMS-64-4 Transcriptome and Histones in Naive B Cell	`[323] NB_2_RNA.cram` Transcriptome (NB Rep2) JBrowse `[327] H3K36me3.bigwig` H3K36me3 JBrowse `[328] H3K4me1.bigwig` H3K4me1 JBrowse `[329] H3K27me3.bigwig` H3K27me3 JBrowse `[330] H3K9me3.bigwig` H3K9me3 JBrowse `[332] H3K4me3.bigwig` H3K4me3 JBrowse `[334] H3K27ac.bigwig` H3K27ac JBrowse `[322] NB_1_RNA.cram` Transcriptome (NB Rep1) JBrowse	hg38	Naive B cell	Disease Lymphoma
GMS-64-6 HiC Contacts in NB and GCB	`[344] PromoLRC_GCB.bed.gz` Promoter-LRC at GCB (All) JBrowse `[343] PromoLRC_NB.bed.gz` Promoter-LRC at NB (All) JBrowse `[342] PromoLRC_GCB_0.01.bigbed` GCB_PromoLRC_0.01 JBrowse `[341] PromoLRC_NB_0.01.bigbed` NB_PromoLRC_0.01 JBrowse	hg38	B cell	Disease Lymphoma
GMS-64-9 Smc3 and B-cell transit	`[442] GSM4275413_CB-CTRL-DpnII-1.5000.mcool` CB_WT_1 PHiC JBrowse `[443] GSM4275415_CB-SMC3-DpnII-1.5000.mcool` CB_SMC3_1 PHiC JBrowse `[445] GSM4275416_CB-SMC3-DpnII-2.5000.mcool` CB_SMC3_2 PHiC JBrowse `[447] GSM4275414_CB-CTRL-DpnII-2.5000.mcool` CB_WT_2 PHiC JBrowse `[449] GSM4275421_NB-CTRL-DpnII-1.5000.mcool` NB_WT_1 PHiC JBrowse `[450] GSM4275422_NB-CTRL-DpnII-2.5000.mcool` NB_WT_2 PHiC JBrowse `[451] GSM4275418_CC-CTRL-DpnII-2.5000.mcool` CC_WT_2 PHiC JBrowse `[452] GSM4275419_CC-SMC3-DpnII-1.5000.mcool` CC_SMC3_1 PHiC JBrowse `[453] GSM4275417_CC-CTRL-DpnII-1.5000.mcool` CC_WT_1 PHiC JBrowse `[454] GSM4275420_CC-SMC3-DpnII-2.5000.mcool` CC_SMC3_2 PHiC JBrowse	mm10	B cell	Hi-C Lymphoma B cell