| Accession | GMS-64-6
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| Title | HiC Contacts in NB and GCB |
| Submit date | 2025-02-08 15:46:36 |
| Last update date | 2025-04-01 13:52:44 |
| Contact | Sung-Joon PARK park AT hgc.jp The University of Tokyo |
| Sharing | |
| Total file size | 2.17 MB |
| Keywords | Disease Lymphoma |
| Experiment type | GSE84022 |
| Summary | In human Naive B cell (NB) and Germinal Center B cell (GCB), gene promoters (-2500/+500 from TSS) have long-range contacts (LRC) detected by Hi-C. After filtering LRCs located within intergenic regions, each LRC has been scored by the number of contacts x Histone signals (H3K27ac, H3K4me1), similar to the ABC model (=LRC activity score). |
| Citation(s) | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84022 |
| Organism | Human |
| Cell (Tissue) | B cell |
| Protocol | |
| Data processing | liftOver from hg19 to hg38. Contacts having >0.01 Activity Score. The contactor anchor position is the center of 5Kbp HiC anchor positions. |
| [342] | GCB_PromoLRC_0.01 Browse Browse (All) Human (hg38); Hi-C |
 BB PromoLRC_GCB_0.01.bigbed (180.79 KB) |
| [341] | NB_PromoLRC_0.01 Browse Human (hg38); Hi-C |
BB PromoLRC_NB_0.01.bigbed (271.60 KB) |
| [344] | Promoter-LRC at GCB (All) Human (hg38); Hi-C |
BED PromoLRC_GCB.bed.gz (758.38 KB) |
| [343] | Promoter-LRC at NB (All) Human (hg38); Hi-C |
BED PromoLRC_NB.bed.gz (961.82 KB) |
| [342] PromoLRC_GCB_0.01.bigbed
GCB_PromoLRC_0.01 application/octet-stream 180.79 KB MD5: 92fca6df5b44d6a2a620095c0222be7d |
| [341] PromoLRC_NB_0.01.bigbed
NB_PromoLRC_0.01 application/octet-stream 271.60 KB MD5: 06e14e576759387de622507347fcd46b |
| [344] PromoLRC_GCB.bed.gz
Promoter-LRC at GCB (All) application/x-gzip 758.38 KB MD5: 0a44bd05fa7c117c28fc4ebf2f61f323 |
| [343] PromoLRC_NB.bed.gz
Promoter-LRC at NB (All) application/x-gzip 961.82 KB MD5: f1f555c4e848dcf9e5eb879fafaaf34e |
