GM Suite

Data Browser

Sox2	1
Nucleosome	1
Simulation	1
Nanog gene	1
Transcription factor	1
Rna polymerase ii	1
Chromatin	1

Nuclear-scale 12

Cohesin	1
Micro-c	1
Disease	2
Cdls	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Development 2

Spermatogenesis	2
Primordial germ cell	2

Disease 15

Organoid	1
Sjogren's syndrome	1
Lymphoma	2
Cohesin	1
Micro-c	1
Cdls	2
Nuclear-scale	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Cell cycle 4

Chromatin motion	1
Interphase	1
Fractal polymer	1
Brownian dynamics	1

File Type 15

BAM	44
BED	2
BIGBED	2
BIGWIG	60
CIF	6
CRAM	4
HIC	219
JPG	4
MCOOL	10
MP4	20
PDB	1
PNG	11
TXT	3
WEBM	1
ZIP	1

Organism 2

Human - hg38	267
Mouse - mm10	74

Cell/Tissue 26

293FT	1
B cell	2
B cell derived cell line	5
Cerebellar granule neuron - 8 days old	11
CH12	2
Embryonic stem cell	1
ES-E14	3
ESC	1
Germinal Center B Cell	1
GM12878	9
H1-hESC	15
HAP-1	5
HCT116	12
Heart left atrium	4
Heart left ventricle	4
HeLa	2
HeLa-S3	60
HFF-hTERT	13
HUVEC cell	2
K562	19
Larcrimal gland	1
Naive B cell	1
Not applicable	5
Primordial germ cell	1
Sperm	1
WTC-11 differentiated to cardiac muscle cell	12

Keyword >> Disease

Accession	File	RefGenome	Cell/Tissue	Keywords
GMS-64-2 Generation of 3D Lacrimal Gland Organoids from Hum...	`[169] D10_Cls0_1_10.png` Cell populations (Day 10) `[168] LacrimalGland.webm` LG-like organoid		Larcrimal gland	Organoid Disease Sjogren's syndrome
GMS-64-4 Transcriptome and Histones in Naive B Cell	`[322] NB_1_RNA.cram` Transcriptome (NB Rep1) JBrowse `[323] NB_2_RNA.cram` Transcriptome (NB Rep2) JBrowse `[327] H3K36me3.bigwig` H3K36me3 JBrowse `[328] H3K4me1.bigwig` H3K4me1 JBrowse `[329] H3K27me3.bigwig` H3K27me3 JBrowse `[330] H3K9me3.bigwig` H3K9me3 JBrowse `[332] H3K4me3.bigwig` H3K4me3 JBrowse `[334] H3K27ac.bigwig` H3K27ac JBrowse	hg38	Naive B cell	Disease Lymphoma
GMS-64-6 HiC Contacts in NB and GCB	`[342] PromoLRC_GCB_0.01.bigbed` GCB_PromoLRC_0.01 JBrowse `[344] PromoLRC_GCB.bed.gz` Promoter-LRC at GCB (All) JBrowse `[343] PromoLRC_NB.bed.gz` Promoter-LRC at NB (All) JBrowse `[341] PromoLRC_NB_0.01.bigbed` NB_PromoLRC_0.01 JBrowse	hg38	B cell	Disease Lymphoma
GMS-65-112 A common molecular mechanism underlying Cornelia d...	`[745] GSM8529572_RAD21_ChIP_FT_control.100.bigwig` RAD21 in wild-type cells JBrowse `[760] GraphicalAbstract.png` N/A `[746] GSM8529574_NIPBL_ChIP_FT_control.100.bigwig` NIPBL in wild-type cells JBrowse `[747] GSM8529575_NIPBL_ChIP_NIPBLmut.100.bigwig` NIPBL in NIPBL-mutated cells JBrowse `[748] GSM8529576_BRD4_ChIP_FT_control.100.bigwig` BRD4 in wild-type cells JBrowse `[749] GSM8529577_BRD4_ChIP_NIPBLmut.100.bigwig` BRD4 in NIPBL-mutated cells JBrowse `[750] GSM8529578_H3K27ac_ChIP_FT_control.100.bigwig` H3K27ac in wild-type cells JBrowse `[751] GSM8529579_H3K27ac_ChIP_NIPBLmut.100.bigwig` H3K27ac in NIPBL-mutated cells JBrowse `[752] GSM8529584_NELFC_ChIP_FT_control.100.bigwig` NELFC in wild-type cells JBrowse `[753] GSM8529585_NELFC_ChIP_NIPBLmut.100.bigwig` NELFC in NIPBL-mutated cells JBrowse `[754] GSM8529582_AFF4_ChIP_FT_control.100.bigwig` AFF4 in wild-type cells JBrowse `[755] GSM8529583_AFF4_ChIP_NIPBLmut.100.bigwig` AFF4 in NIPBL-mutated cells JBrowse `[756] GSM8529580_input_1_FT_control.100.bigwig` Input in wild-type cells (replicate 1) JBrowse `[757] GSM8529581_input_1_NIPBLmut.100.bigwig` Input in NIPBL-mutated cells (replicate 1) JBrowse `[758] GSM8529586_input_2_FT_control.100.bigwig` Input in wild-type cells (replicate 2) JBrowse `[759] GSM8529587_input_2_NIPBLmut.100.bigwig` Input in NIPBL-mutated cells (replicate 2) JBrowse `[744] GSM8529573_RAD21_ChIP_NIPBLmut.100.bigwig` RAD21 in NIPBL-mutated cells JBrowse	hg38	293FT	Disease CHOPS CdLS Nuclear-scale AFF4 NELFC RAD21 NIPBL BRD4
GMS-65-2 Degradation of RAD21 in HCT-116	`[389] accepted_hits.bam.sorted.bam` EU-seq (control, Rep1) JBrowse `[386] H3K4me1_np1_peaks.narrowPeak.scaled.bigwig` H3K4me1 narrow peaks (control) JBrowse `[385] H3K27ac_np1_peaks.narrowPeak.scaled.bigwig` H3K27ac narrow peaks (control) JBrowse `[374] RAD21_np1_peaks.narrowPeak.scaled.bigwig` RAD21 narrow peaks (control) JBrowse `[373] P300_np1_peaks.narrowPeak.scaled.bigwig` P300 narrow peaks (control) JBrowse `[372] MED1_np1_peaks.narrowPeak.scaled.bigwig` MED1 narrow peaks (control, rep1) JBrowse `[371] MAU2_np1_peaks.narrowPeak.scaled.bigwig` MAU2 narrow peaks (control) JBrowse `[370] NCBP1_np1_peaks.narrowPeak.scaled.bigwig` NCBP1 narrow peaks (control) JBrowse `[369] MED1_np2_peaks.narrowPeak.scaled.bigwig` MED1 narrow peaks (control, rep2) JBrowse `[368] CDK9_np1_peaks.narrowPeak.scaled.bigwig` CDK9 narrow peaks (control) JBrowse `[367] NELFCD_np1_peaks.narrowPeak.scaled.bigwig` NELFCD narrow peaks (control) JBrowse `[353] CBP_np1_peaks.narrowPeak.scaled.bigwig` CBP narrow peaks (control) JBrowse `[350] BRD4_np1_peaks.narrowPeak.scaled.bigwig` BRD4 narrow peaks (control) JBrowse `[347] AFF4_np1_peaks.narrowPeak.scaled.bigwig` AFF4 narrow peaks (control) JBrowse `[346] 6RRC.png` human cohesin subunit STAG1 in complex with RAD21 ...	hg38	HCT116	Cohesin Micro-C Disease CdLS Nuclear-scale AFF4 BRD4 MAU2 RAD21 SPT4