| Accession | GMS-64-4
URL copied to the clipboard |
| Title | Transcriptome and Histones in Naive B Cell |
| Submit date | 2023-01-26 17:14:35 |
| Last update date | 2023-01-31 17:55:39 |
| Contact | Sung-Joon PARK park AT hgc.jp The University of Tokyo |
| Sharing | |
| Total file size | 8.63 GB |
| Keywords | Histone Naive B Cell transcriptome |
| Experiment type | ChIP-seq data of Histone Marks in NB and GCB prepared from DeepBlue (https://deepblue.mpi-inf.mpg.de/) RNA-seq datasets are SRR3743468 (Rep1) and SRR3743469 (Rep2) |
| Summary | H3K4me3 S00Y7SH1.ERX712728.H3K4me3.bwa.GRCh38.20150527.bed etc. H3K4me1 S00Y7SH1.ERX712729.H3K4me1.bwa.GRCh38.broad.20150527.bed etc. H3K27ac S0158NH1.ERX1122489.H3K27ac.bwa.GRCh38.20151026.bed etc. H3K27me3 S00Y7SH1.ERX712731.H3K27me3.bwa.GRCh38.broad.20150527.bed etc. H3K9me3 S00Y7SH1.ERX712732.H3K9me3.bwa.GRCh38.broad.20150527.bed etc. H3K36me3 S00VMAH1.ERX1122418.H3K36me3.bwa.GRCh38.broad.20160721.bed etc. NB_1_RNA (RNA-seq) SRR3743468 NB_2_RNA (RNA-seq) SRR3743469 |
| Citation(s) |
| Organism | Human |
| Cell (Tissue) | Naive B Cell |
| Protocol | Histone ChIP-seq The protocol will be found from DeepBlue website (https://deepblue.mpi-inf.mpg.de/) |
| Data processing | The ChIP-seq BED files downloaded from DeepBlue were processed by >2 fold-change and < 0.05 q-value. The RNA-seq FASTQ files were processed by Trimmomatic and Hisat2. |
| [1] | H3K27ac H3K27ac.bigwig (3.14 MB) Human (hg38); ChIP-Seq |
 BW |
| [2] | H3K27me3 H3K27me3.bigwig (2.68 MB) Human (hg38); ChIP-Seq |
BW |
| [3] | H3K36me3 H3K36me3.bigwig (1.24 MB) Human (hg38); ChIP-Seq |
BW |
| [4] | H3K4me1 H3K4me1.bigwig (2.57 MB) Human (hg38); ChIP-Seq |
BW |
| [5] | H3K4me3 H3K4me3.bigwig (1.19 MB) Human (hg38); ChIP-Seq |
BW |
| [6] | H3K9me3 H3K9me3.bigwig (3.01 MB) Human (hg38); ChIP-Seq |
BW |
| [7] | Transcriptome (NB Rep1) NB_1_RNA.cram (3.14 GB) Human (hg38); RNA-Seq |
CRAM |
| [8] | Transcriptome (NB Rep2) NB_2_RNA.cram (5.48 GB) Human (hg38); RNA-Seq |
CRAM |
