Information
Accession GMS-64-4 

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TitleTranscriptome and Histones in Naive B Cell
Submit date2023-01-26 17:14:35
Last update date2025-04-01 13:52:25
Contact Sung-Joon PARK
park AT hgc.jp
The University of Tokyo
Sharing
Total file size8.63 GB
Keywords Disease Lymphoma 
 Study
Experiment type ChIP-seq data of Histone Marks in NB and GCB prepared from DeepBlue (https://deepblue.mpi-inf.mpg.de/)
RNA-seq datasets are SRR3743468 (Rep1) and SRR3743469 (Rep2)
Summary H3K4me3
S00Y7SH1.ERX712728.H3K4me3.bwa.GRCh38.20150527.bed etc.
H3K4me1
S00Y7SH1.ERX712729.H3K4me1.bwa.GRCh38.broad.20150527.bed etc.
H3K27ac
S0158NH1.ERX1122489.H3K27ac.bwa.GRCh38.20151026.bed etc.
H3K27me3
S00Y7SH1.ERX712731.H3K27me3.bwa.GRCh38.broad.20150527.bed etc.
H3K9me3
S00Y7SH1.ERX712732.H3K9me3.bwa.GRCh38.broad.20150527.bed etc.
H3K36me3
S00VMAH1.ERX1122418.H3K36me3.bwa.GRCh38.broad.20160721.bed etc.
NB_1_RNA (RNA-seq) SRR3743468
NB_2_RNA (RNA-seq) SRR3743469
Citation(s)
 Experiment
OrganismHuman
Cell (Tissue) Naive B cell
Protocol Histone ChIP-seq 
The protocol will be found from DeepBlue website (https://deepblue.mpi-inf.mpg.de/)
Data processing The ChIP-seq BED files downloaded from DeepBlue were processed by >2 fold-change and < 0.05 q-value.
The RNA-seq FASTQ files were processed by Trimmomatic and Hisat2.
 Analysis
[334] H3K27ac
Browse  Browse (All)
Human (hg38); ChIP-Seq
  
BW
H3K27ac.bigwig (3.14 MB)  
[329] H3K27me3
Browse 
Human (hg38); ChIP-Seq
  
BW
H3K27me3.bigwig (2.68 MB)  
[327] H3K36me3
Browse 
Human (hg38); ChIP-Seq
  
BW
H3K36me3.bigwig (1.24 MB)  
[328] H3K4me1
Browse 
Human (hg38); ChIP-Seq
  
BW
H3K4me1.bigwig (2.57 MB)  
[332] H3K4me3
Browse 
Human (hg38); ChIP-Seq
  
BW
H3K4me3.bigwig (1.19 MB)  
[330] H3K9me3
Browse 
Human (hg38); ChIP-Seq
  
BW
H3K9me3.bigwig (3.01 MB)  
[322] Transcriptome (NB Rep1)
Browse 
Human (hg38); RNA-Seq
  
CRAM
NB_1_RNA.cram (3.14 GB)  
[323] Transcriptome (NB Rep2)
Browse 
Human (hg38); RNA-Seq
  
CRAM
NB_2_RNA.cram (5.48 GB)  
 Supplements [download all]
[334] H3K27ac.bigwig 
 H3K27ac
 application/octet-stream 3.14 MB MD5: 938cb6592fd15bc0745a38cdaf594d74
[329] H3K27me3.bigwig 
 H3K27me3
 application/octet-stream 2.68 MB MD5: d535c9de7a5ed99541e4c005dac573de
[327] H3K36me3.bigwig 
 H3K36me3
 application/octet-stream 1.24 MB MD5: 1f5d13179ba781a25f3f87f741534376
[328] H3K4me1.bigwig 
 H3K4me1
 application/octet-stream 2.57 MB MD5: 34f941a15a47601faa8651b0cabfe389
[332] H3K4me3.bigwig 
 H3K4me3
 application/octet-stream 1.19 MB MD5: ed844e463c1ddea25da755a845fe30eb
[330] H3K9me3.bigwig 
 H3K9me3
 application/octet-stream 3.01 MB MD5: 10f3ca9d426699bbfcc35f35b1e9176b
[322] NB_1_RNA.cram 
 Transcriptome (NB Rep1)
 application/octet-stream 3.14 GB MD5: 6226786388f2080abdc13b077aba3b5e
[323] NB_2_RNA.cram 
 Transcriptome (NB Rep2)
 application/octet-stream 5.48 GB MD5: 4c8f617de071a6849e6f370deb5f32a8