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Accession File (18) Cell/Tissue Keywords
GMS-65-113 
Intra-chromosomal Hi-C contacts in mESC
1043
Flexibility and Viscoelasticity
PHiC_FlexVisco.png (1.13 MB)
2025-05-16 18:37:18 

766Domains PHiC JBrowse
Intra-chromosomal Hi-C contacts (Rep 2)
Merge2.intra.MQ30.ValidPairs.hic (1.79 GB)
2025-04-10 14:27:30 mm10 Hi-C

765PHiC: Stiffness JBrowse
Intra-chromosomal Hi-C contacts (Rep1)
Merge1.intra.MQ30.ValidPairs.hic (1.69 GB)
2025-04-10 09:49:35 mm10 Hi-C
embryonic stem cell PHi-C2 Nanog 
Flexibility Viscoelasiticity 
Genome DNA Stiffness 
Nuclear-scale 
GMS-83-2 
In silico nanoscope to study the interplay of genome organization and transcript...
687
Cluster 3
Eq_Struct_Cluster3.cif (262.66 MB)
2025-03-24 16:55:57 

690
Cluster 5
Eq_Struct_Cluster5.cif (262.66 MB)
2025-03-24 16:55:57 

689
Cluster 1
Eq_Struct_Cluster1.cif (262.66 MB)
2025-03-24 16:55:57 

688
Cluster 4
Eq_Struct_Cluster4.cif (262.66 MB)
2025-03-24 16:55:57 

674
ReadMe.txt
READ_ME.txt (1.74 KB)
2025-03-20 11:24:42 

686
Cluster 2
Eq_Struct_Cluster2.cif (262.66 MB)
2025-03-24 16:55:57 

683
Cluster 2
Eq_Cluster2_rock.mp4 (38.23 MB)
2025-03-20 21:59:15 

682
Cluster 4
Eq_Cluster4_rock.mp4 (34.44 MB)
2025-03-20 21:59:14 

681
Cluster 1
Eq_Cluster1_rock.mp4 (25.16 MB)
2025-03-20 21:58:48 

680
Cluster 3
Eq_Cluster3_rock.mp4 (33.76 MB)
2025-03-20 21:58:47 

679
Cluster 5
Eq_Cluster5_rock.mp4 (16.92 MB)
2025-03-20 18:13:08 

678
Cluster 1
Eq_Cluster1_zoomin.mp4 (5.45 MB)
2025-03-20 17:57:24 

675
ZIP (Cif, Gro, Pse)
Struct_Cluster1-5.zip (1.07 GB)
2025-03-20 11:42:31 
embryonic stem cell Nanog gene Transcription factor 
RNA polymerase II Chromatin 
Nanoscale 
GMS-97-2 
Transcription-coupled changes in genomic region proximities during transcription...
980
Genome dynamics in Nanog inactive state simulated by PHi-C
adn0020_movie_s3.mp4 (6.01 MB)
2025-05-13 14:55:46 

981
Genome dynamics in Nanog active state simulated by PHi-C
adn0020_movie_s2.mp4 (5.37 MB)
2025-05-13 14:55:47 
embryonic stem cell PHi-C2 Genome DNA 
Modeling Mesoscale 
Brownian dynamics Nanog