Keyword >> Chromatin
| Accession | File (49) | Cell/Tissue | Keywords |
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GMS-169-1 Replication-dependent histone labeling dissects the physical properties of euchr... |
912
A G1-synchronized living HeLa cell with the heterochromatin (class II) Repli-Histo labeling (left) a... sciadv.adu8400_movie_s15.mp4 (6.44 MB) 2025-05-08 10:49:10 902 A living HeLa cell with the euchromatin (class IA) Repli-Histo labeling (left) and corresponding sin... sciadv.adu8400_movie_s05.mp4 (6.37 MB) 2025-05-08 10:47:41 903 A living HeLa cell with the euchromatin (class IB) Repli-Histo labeling (left) and corresponding sin... sciadv.adu8400_movie_s06.mp4 (6.33 MB) 2025-05-08 10:47:55 904 A living HeLa cell with the heterochromatin (class II) Repli-Histo labeling (left) and corresponding... sciadv.adu8400_movie_s07.mp4 (6.24 MB) 2025-05-08 10:47:57 905 A living HeLa cell with the heterochromatin (class III) Repli-Histo labeling (left) and correspondin... sciadv.adu8400_movie_s08.mp4 (5.76 MB) 2025-05-08 10:48:12 906 A living RPE-1 cell with the euchromatin (class IA) Repli-Histo labeling (left) and corresponding si... sciadv.adu8400_movie_s09.mp4 (6.07 MB) 2025-05-08 10:48:13 907 A living RPE-1 cell with the euchromatin (class IB) Repli-Histo labeling (left) and corresponding si... sciadv.adu8400_movie_s10.mp4 (6.31 MB) 2025-05-08 10:48:18 908 A living RPE-1 cell with the heterochromatin (class II) Repli-Histo labeling (left) and correspondin... sciadv.adu8400_movie_s11.mp4 (6.32 MB) 2025-05-08 10:48:23 909 A living RPE-1 cell with the heterochromatin (class III) Repli-Histo labeling (left) and correspondi... sciadv.adu8400_movie_s12.mp4 (6.49 MB) 2025-05-08 10:48:30 910 A G1-synchronized living HeLa cell with the euchromatin (class IA) Repli-Histo labeling (left) and c... sciadv.adu8400_movie_s13.mp4 (6.13 MB) 2025-05-08 10:49:07 911 A G1-synchronized living HeLa cell with the euchromatin (class IB) Repli-Histo labeling (left) and c... sciadv.adu8400_movie_s14.mp4 (6.32 MB) 2025-05-08 10:49:09 913 A G1-synchronized living HeLa cell with the heterochromatin (class III) Repli-Histo labeling (left) ... sciadv.adu8400_movie_s16.mp4 (6.31 MB) 2025-05-08 10:49:11 914 A living S-phase HeLa cell with the euchromatin (class IA)-bound CDC45-Halo foci (left) and correspo... sciadv.adu8400_movie_s18.mp4 (6.40 MB) 2025-05-08 10:49:12 915 A living S-phase HeLa cell with the euchromatin (class IB)-bound CDC45-Halo foci (left) and corresp... sciadv.adu8400_movie_s19.mp4 (6.40 MB) 2025-05-08 10:49:29 916 A living S-phase HeLa cell with the heterochromatin (class II)-bound CDC45-Halo foci (left) and corr... sciadv.adu8400_movie_s20.mp4 (6.31 MB) 2025-05-08 10:49:30 917 A living S-phase HeLa cell with the heterochromatin (class III)-bound CDC45-Halo foci (left) and cor... sciadv.adu8400_movie_s21.mp4 (6.43 MB) 2025-05-08 10:49:31 918 Dual-color single-nucleosome imaging with the euchromatin-specific (class IA) Repli-Histo labeling i... sciadv.adu8400_movie_s22.mp4 (6.98 MB) 2025-05-08 10:49:33 919 A magnified view of Movie [918], showing the closely labeled single-nucleosome pairs (yellow arrows)... sciadv.adu8400_movie_s23.mp4 (6.58 MB) 2025-05-08 11:06:08 920 Dual-color single-nucleosome imaging with the heterochromatin-specific (class II) Repli-Histo labeli... sciadv.adu8400_movie_s24.mp4 (7.21 MB) 2025-05-08 11:06:09 921 Dual-color single-nucleosome imaging with the euchromatin-specific (class IA) Repli-Histo labeling i... sciadv.adu8400_movie_s25.mp4 (6.96 MB) 2025-05-08 11:06:11 922 Dual-color single-nucleosome imaging with the heterochromatin-specific (class II) Repli-Histo labeli... sciadv.adu8400_movie_s26.mp4 (7.10 MB) 2025-05-08 11:06:12 |
HeLa and RPE-1 | Cell cycle Mesoscale Chromatin motion Interphase S phase Euchromatin Heterochromatin HeLa RPE-1 DNA replication |
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GMS-58-4 Towards deep understanding of the Genome |
158
N/A GMsuite.png (72.20 KB) 2022-01-29 16:23:11 150 N/A GM.png (17.20 KB) 2022-01-28 12:08:30 236 N/A MultiScale_Modals.mp4 (7.13 MB) 2023-01-11 16:30:19 |
GenomeModality | DNA Chromatin RNA |
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GMS-65-1 Intra-chromosomal Hi-C contacts (mESC Rep1) |
171
JBrowse
Mouse ESC RNA-seq (GSM4647545) ESC1_RNA.bam (1.65 GB) 2022-03-02 18:42:53 mm10 RNA-Seq 172 JBrowse H1 cell line (SRR2977621) H1_human_RNA.bam (429.08 MB) 2022-03-02 18:51:57 hg38 RNA-Seq 190 JBrowse Transcriptome at E16.5 E16.5_Rep1.bam (558.05 MB) 2022-03-12 16:36:08 mm10 RNA-Seq 228 Domains PHiC JBrowse Intra-chromosomal Hi-C contacts (mESC Rep1) mESC1.intra.hic (1.69 GB) 2022-03-14 18:33:29 mm10 Hi-C 393 Chr8 Model Image Chr8_PhiC.png (455.24 KB) 2023-06-04 13:02:42 |
embryonic stem cell | Chromatin Hi-C PHi-C2 Genome DNA Nuclear-scale |
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GMS-65-5 Single-nucleosome imaging reveals steady-state motion of interphase chromatin in... |
400
Local chromatin motion is similar between G1 (left) and G2 (right) though nuclear volume grows doubl... Combined_Mov4_Mov5.mp4 (12.28 MB) 2023-08-30 11:07:33 394 An image of single-nucleosomes in living cells Figure1_2022_04_18.jpg (541.14 KB) 2023-08-30 10:59:39 395 3D-reconstituted image of a nucleus Figure3_2022_03_27KM_0401iida2.jpg (137.03 KB) 2023-08-30 10:59:39 396 Steady-state local chromatin motion during interphase cell cycle despite of increase in DNA amount a... Figure10_2022_03_27.jpg (1.03 MB) 2023-08-30 10:59:39 397 A computational simulation of chromatin Brownian dynamics Movie2.mp4 (5.73 MB) 2023-08-30 11:05:51 398 A movie of single-nucleosomes in living cells Movie1_2.mp4 (12.10 MB) 2023-08-30 11:05:51 399 3D-reconstituted image of a nucleus Movie3.mp4 (13.16 MB) 2023-08-30 11:05:51 |
HeLa | Chromatin motion Interphase Fractal polymer Brownian dynamics Mesoscale Cell cycle |
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GMS-83-2 In silico nanoscope to study the interplay of genome organization and transcript... |
683
Cluster 2 Eq_Cluster2_rock.mp4 (38.23 MB) 2025-03-20 21:59:15 674 ReadMe.txt READ_ME.txt (1.74 KB) 2025-03-20 11:24:42 675 ZIP (Cif, Gro, Pse) Struct_Cluster1-5.zip (1.07 GB) 2025-03-20 11:42:31 678 Cluster 1 Eq_Cluster1_zoomin.mp4 (5.45 MB) 2025-03-20 17:57:24 679 Cluster 5 Eq_Cluster5_rock.mp4 (16.92 MB) 2025-03-20 18:13:08 680 Cluster 3 Eq_Cluster3_rock.mp4 (33.76 MB) 2025-03-20 21:58:47 681 Cluster 1 Eq_Cluster1_rock.mp4 (25.16 MB) 2025-03-20 21:58:48 682 Cluster 4 Eq_Cluster4_rock.mp4 (34.44 MB) 2025-03-20 21:59:14 690 Cluster 5 Eq_Struct_Cluster5.cif (262.66 MB) 2025-03-24 16:55:57 689 Cluster 1 Eq_Struct_Cluster1.cif (262.66 MB) 2025-03-24 16:55:57 688 Cluster 4 Eq_Struct_Cluster4.cif (262.66 MB) 2025-03-24 16:55:57 687 Cluster 3 Eq_Struct_Cluster3.cif (262.66 MB) 2025-03-24 16:55:57 686 Cluster 2 Eq_Struct_Cluster2.cif (262.66 MB) 2025-03-24 16:55:57 |
embryonic stem cell | Nanog gene Transcription factor RNA polymerase II Chromatin Nanoscale |
