Keyword >> PHi-C2
| Accession | File (14) | Cell/Tissue | Keywords |
|---|---|---|---|
|
GMS-65-1 Intra-chromosomal Hi-C contacts (mESC Rep1) |
171
JBrowse
Mouse ESC RNA-seq (GSM4647545) ESC1_RNA.bam (1.65 GB) 2022-03-02 18:42:53 mm10 RNA-Seq 172 JBrowse H1 cell line (SRR2977621) H1_human_RNA.bam (429.08 MB) 2022-03-02 18:51:57 hg38 RNA-Seq 190 JBrowse Transcriptome at E16.5 E16.5_Rep1.bam (558.05 MB) 2022-03-12 16:36:08 mm10 RNA-Seq 228 Domains PHiC JBrowse Intra-chromosomal Hi-C contacts (mESC Rep1) mESC1.intra.hic (1.69 GB) 2022-03-14 18:33:29 mm10 Hi-C 393 Chr8 Model Image Chr8_PhiC.png (455.24 KB) 2023-06-04 13:02:42 |
embryonic stem cell | Chromatin Hi-C PHi-C2 Genome DNA Nuclear-scale |
|
GMS-65-113 Intra-chromosomal Hi-C contacts in mESC |
765
PHiC: Stiffness
JBrowse
Intra-chromosomal Hi-C contacts (Rep1) Merge1.intra.MQ30.ValidPairs.hic (1.69 GB) 2025-04-10 09:49:35 mm10 Hi-C 766 Domains PHiC JBrowse Intra-chromosomal Hi-C contacts (Rep 2) Merge2.intra.MQ30.ValidPairs.hic (1.79 GB) 2025-04-10 14:27:30 mm10 Hi-C 1043 Flexibility and Viscoelasticity PHiC_FlexVisco.png (1.13 MB) 2025-05-16 18:37:18 |
embryonic stem cell | PHi-C2 Nanog Flexibility Viscoelasiticity Genome DNA Stiffness Nuclear-scale |
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GMS-97-1 PHi-C2: interpreting Hi-C data as the dynamic 3D genome state |
978
Rheology analysis figureS5.pdf (2.11 MB) 2025-05-13 14:43:43 979 Rheology analysis figureS5.png (717.12 KB) 2025-05-13 14:47:45 |
embryonic stem cell | PHi-C2 Genome DNA Mesoscale Rheology Modeling Viscoelasticity |
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GMS-97-2 Transcription-coupled changes in genomic region proximities during transcription... |
980
Genome dynamics in Nanog inactive state simulated by PHi-C adn0020_movie_s3.mp4 (6.01 MB) 2025-05-13 14:55:46 981 Genome dynamics in Nanog active state simulated by PHi-C adn0020_movie_s2.mp4 (5.37 MB) 2025-05-13 14:55:47 |
embryonic stem cell | PHi-C2 Genome DNA Modeling Mesoscale Brownian dynamics Nanog |
|
GMS-97-3 4D Genome Analysis Using PHi-C2 |
982
A 4D genome analysis of PHi-C2 for mESCs (chr1: 130–135 Mb, 25-kb bins) fig3.pdf (363.37 KB) 2025-05-13 15:08:16 983 A 4D genome analysis of PHi-C2 for mESCs (chr1: 130–135 Mb, 25-kb bins) fig3.png (449.23 KB) 2025-05-13 15:08:49 |
embryonic stem cell | PHi-C2 Genome DNA Mesoscale MSD analysis Viscoelasticity Rheology |
