GM Suite

Data Browser

Sox2	1
Nucleosome	1
Simulation	1
Nanog gene	1
Transcription factor	1
Rna polymerase ii	1
Chromatin	1

Nuclear-scale 12

Cohesin	1
Micro-c	1
Disease	2
Cdls	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Development 2

Spermatogenesis	2
Primordial germ cell	2

Disease 15

Organoid	1
Sjogren's syndrome	1
Lymphoma	2
Cohesin	1
Micro-c	1
Cdls	2
Nuclear-scale	2
Aff4	2
Brd4	2
Mau2	1
Rad21	2
Spt4	1
Chops	1
Nelfc	1
Nipbl	1

Cell cycle 4

Chromatin motion	1
Interphase	1
Fractal polymer	1
Brownian dynamics	1

File Type 15

BAM	44
BED	2
BIGBED	2
BIGWIG	60
CIF	6
CRAM	4
HIC	219
JPG	4
MCOOL	10
MP4	20
PDB	1
PNG	11
TXT	3
WEBM	1
ZIP	1

Organism 2

Human - hg38	267
Mouse - mm10	74

Cell/Tissue 26

293FT	1
B cell	2
B cell derived cell line	5
Cerebellar granule neuron - 8 days old	11
CH12	2
Embryonic stem cell	1
ES-E14	3
ESC	1
Germinal Center B Cell	1
GM12878	9
H1-hESC	15
HAP-1	5
HCT116	12
Heart left atrium	4
Heart left ventricle	4
HeLa	2
HeLa-S3	60
HFF-hTERT	13
HUVEC cell	2
K562	19
Larcrimal gland	1
Naive B cell	1
Not applicable	5
Primordial germ cell	1
Sperm	1
WTC-11 differentiated to cardiac muscle cell	12

Keyword >> Chromatin

Accession	File	RefGenome	Cell/Tissue	Keywords
GMS-58-4 Towards deep understanding of the Genome	`[158] GMsuite.png` N/A `[236] MultiScale_Modals.mp4` N/A `[150] GM.png` N/A		GenomeModality	DNA Chromatin RNA
GMS-65-1 Intra-chromosomal Hi-C contacts (mESC Rep1)	`[171] ESC1_RNA.bam` Mouse ESC RNA-seq (GSM4647545) JBrowse `[172] H1_human_RNA.bam` H1 cell line (SRR2977621) JBrowse `[190] E16.5_Rep1.bam` Transcriptome at E16.5 JBrowse `[228] mESC1.intra.hic` Intra-chromosomal Hi-C contacts (mESC Rep1) Domains PHiC JBrowse `[393] Chr8_PhiC.png` Chr8 Model Image	mm10	ESC	Chromatin PHi-C Hi-C
GMS-65-5 Single-nucleosome imaging reveals steady-state mot...	`[400] Combined_Mov4_Mov5.mp4` Local chromatin motion is similar between G1 (left... `[399] Movie3.mp4` 3D-reconstituted image of a nucleus `[398] Movie1_2.mp4` A movie of single-nucleosomes in living cells `[396] Figure10_2022_03_27.jpg` Steady-state local chromatin motion during interph... `[395] Figure3_2022_03_27KM_0401iida2.jpg` 3D-reconstituted image of a nucleus `[394] Figure1_2022_04_18.jpg` An image of single-nucleosomes in living cells `[397] Movie2.mp4` A computational simulation of chromatin Brownian d...		HeLa	Chromatin motion Interphase Cell cycle Fractal polymer Brownian dynamics
GMS-83-2 In silico nanoscope to study the interplay of geno...	`[690] Eq_Struct_Cluster5.cif` Cluster 5 `[689] Eq_Struct_Cluster1.cif` Cluster 1 `[688] Eq_Struct_Cluster4.cif` Cluster 4 `[687] Eq_Struct_Cluster3.cif` Cluster 3 `[686] Eq_Struct_Cluster2.cif` Cluster 2 `[683] Eq_Cluster2_rock.mp4` Cluster 2 `[682] Eq_Cluster4_rock.mp4` Cluster 4 `[681] Eq_Cluster1_rock.mp4` Cluster 1 `[680] Eq_Cluster3_rock.mp4` Cluster 3 `[679] Eq_Cluster5_rock.mp4` Cluster 5 `[678] Eq_Cluster1_zoomin.mp4` Cluster 1 `[675] Struct_Cluster1-5.zip` ZIP (Cif, Gro, Pse) `[674] READ_ME.txt` ReadMe.txt		embryonic stem cell	Nanog gene Transcription factor RNA polymerase II Chromatin Nanoscale