Keyword >> Mesoscale
| Accession | File (42) | Cell/Tissue | Keywords |
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GMS-169-1 Replication-dependent histone labeling dissects the physical properties of euchr... |
912
A G1-synchronized living HeLa cell with the heterochromatin (class II) Repli-Histo labeling (left) a... sciadv.adu8400_movie_s15.mp4 (6.44 MB) 2025-05-08 10:49:10 908 A living RPE-1 cell with the heterochromatin (class II) Repli-Histo labeling (left) and correspondin... sciadv.adu8400_movie_s11.mp4 (6.32 MB) 2025-05-08 10:48:23 907 A living RPE-1 cell with the euchromatin (class IB) Repli-Histo labeling (left) and corresponding si... sciadv.adu8400_movie_s10.mp4 (6.31 MB) 2025-05-08 10:48:18 906 A living RPE-1 cell with the euchromatin (class IA) Repli-Histo labeling (left) and corresponding si... sciadv.adu8400_movie_s09.mp4 (6.07 MB) 2025-05-08 10:48:13 905 A living HeLa cell with the heterochromatin (class III) Repli-Histo labeling (left) and correspondin... sciadv.adu8400_movie_s08.mp4 (5.76 MB) 2025-05-08 10:48:12 904 A living HeLa cell with the heterochromatin (class II) Repli-Histo labeling (left) and corresponding... sciadv.adu8400_movie_s07.mp4 (6.24 MB) 2025-05-08 10:47:57 903 A living HeLa cell with the euchromatin (class IB) Repli-Histo labeling (left) and corresponding sin... sciadv.adu8400_movie_s06.mp4 (6.33 MB) 2025-05-08 10:47:55 902 A living HeLa cell with the euchromatin (class IA) Repli-Histo labeling (left) and corresponding sin... sciadv.adu8400_movie_s05.mp4 (6.37 MB) 2025-05-08 10:47:41 909 A living RPE-1 cell with the heterochromatin (class III) Repli-Histo labeling (left) and correspondi... sciadv.adu8400_movie_s12.mp4 (6.49 MB) 2025-05-08 10:48:30 910 A G1-synchronized living HeLa cell with the euchromatin (class IA) Repli-Histo labeling (left) and c... sciadv.adu8400_movie_s13.mp4 (6.13 MB) 2025-05-08 10:49:07 911 A G1-synchronized living HeLa cell with the euchromatin (class IB) Repli-Histo labeling (left) and c... sciadv.adu8400_movie_s14.mp4 (6.32 MB) 2025-05-08 10:49:09 913 A G1-synchronized living HeLa cell with the heterochromatin (class III) Repli-Histo labeling (left) ... sciadv.adu8400_movie_s16.mp4 (6.31 MB) 2025-05-08 10:49:11 914 A living S-phase HeLa cell with the euchromatin (class IA)-bound CDC45-Halo foci (left) and correspo... sciadv.adu8400_movie_s18.mp4 (6.40 MB) 2025-05-08 10:49:12 915 A living S-phase HeLa cell with the euchromatin (class IB)-bound CDC45-Halo foci (left) and corresp... sciadv.adu8400_movie_s19.mp4 (6.40 MB) 2025-05-08 10:49:29 916 A living S-phase HeLa cell with the heterochromatin (class II)-bound CDC45-Halo foci (left) and corr... sciadv.adu8400_movie_s20.mp4 (6.31 MB) 2025-05-08 10:49:30 917 A living S-phase HeLa cell with the heterochromatin (class III)-bound CDC45-Halo foci (left) and cor... sciadv.adu8400_movie_s21.mp4 (6.43 MB) 2025-05-08 10:49:31 918 Dual-color single-nucleosome imaging with the euchromatin-specific (class IA) Repli-Histo labeling i... sciadv.adu8400_movie_s22.mp4 (6.98 MB) 2025-05-08 10:49:33 919 A magnified view of Movie [918], showing the closely labeled single-nucleosome pairs (yellow arrows)... sciadv.adu8400_movie_s23.mp4 (6.58 MB) 2025-05-08 11:06:08 920 Dual-color single-nucleosome imaging with the heterochromatin-specific (class II) Repli-Histo labeli... sciadv.adu8400_movie_s24.mp4 (7.21 MB) 2025-05-08 11:06:09 921 Dual-color single-nucleosome imaging with the euchromatin-specific (class IA) Repli-Histo labeling i... sciadv.adu8400_movie_s25.mp4 (6.96 MB) 2025-05-08 11:06:11 922 Dual-color single-nucleosome imaging with the heterochromatin-specific (class II) Repli-Histo labeli... sciadv.adu8400_movie_s26.mp4 (7.10 MB) 2025-05-08 11:06:12 |
HeLa and RPE-1 | Cell cycle Mesoscale Chromatin motion Interphase S phase Euchromatin Heterochromatin HeLa RPE-1 DNA replication |
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GMS-65-5 Single-nucleosome imaging reveals steady-state motion of interphase chromatin in... |
395
3D-reconstituted image of a nucleus Figure3_2022_03_27KM_0401iida2.jpg (137.03 KB) 2023-08-30 10:59:39 394 An image of single-nucleosomes in living cells Figure1_2022_04_18.jpg (541.14 KB) 2023-08-30 10:59:39 396 Steady-state local chromatin motion during interphase cell cycle despite of increase in DNA amount a... Figure10_2022_03_27.jpg (1.03 MB) 2023-08-30 10:59:39 397 A computational simulation of chromatin Brownian dynamics Movie2.mp4 (5.73 MB) 2023-08-30 11:05:51 398 A movie of single-nucleosomes in living cells Movie1_2.mp4 (12.10 MB) 2023-08-30 11:05:51 399 3D-reconstituted image of a nucleus Movie3.mp4 (13.16 MB) 2023-08-30 11:05:51 400 Local chromatin motion is similar between G1 (left) and G2 (right) though nuclear volume grows doubl... Combined_Mov4_Mov5.mp4 (12.28 MB) 2023-08-30 11:07:33 |
HeLa | Chromatin motion Interphase Fractal polymer Brownian dynamics Mesoscale Cell cycle |
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GMS-65-6 Condensed but liquid-like domain organization of active chromatin regions in liv... |
407
A computational simulation of chromatin Brownian dynamics Supplemental_MovieS11.mp4 (2.99 MB) 2023-08-30 13:42:41 401 Nucleosomes (blue sphares) in active chromatin regions form condensed domains with local nucleosome ... Figure8_220129.jpg (435.77 KB) 2023-08-30 13:41:46 402 Dual-color imaging of two neighbor nucleosomes reveals that nucleosomes in euchromatin form condense... Final5_copy.mp4 (2.26 MB) 2023-08-30 13:42:20 403 A computational simulation of chromatin Brownian dynamics Supplemental_MovieS9.mp4 (1.20 MB) 2023-08-30 13:42:31 404 A computational simulation of chromatin Brownian dynamics Supplemental_MovieS8.mp4 (3.05 MB) 2023-08-30 13:42:31 405 A computational simulation of chromatin Brownian dynamics Supplemental_MovieS10.mp4 (6.43 MB) 2023-08-30 13:42:32 406 A computational simulation of chromatin Brownian dynamics (cohesin KO) Supplemental_MovieS13.mp4 (1.95 MB) 2023-08-30 13:42:41 408 A computational simulation of chromatin Brownian dynamics Supplemental_MovieS12.mp4 (4.09 MB) 2023-08-30 13:42:41 |
HeLa | Live-cell imaging MSD Brownian dynamics Mesoscale Cell cycle |
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GMS-97-1 PHi-C2: interpreting Hi-C data as the dynamic 3D genome state |
978
Rheology analysis figureS5.pdf (2.11 MB) 2025-05-13 14:43:43 979 Rheology analysis figureS5.png (717.12 KB) 2025-05-13 14:47:45 |
embryonic stem cell | PHi-C2 Genome DNA Mesoscale Rheology Modeling Viscoelasticity |
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GMS-97-2 Transcription-coupled changes in genomic region proximities during transcription... |
980
Genome dynamics in Nanog inactive state simulated by PHi-C adn0020_movie_s3.mp4 (6.01 MB) 2025-05-13 14:55:46 981 Genome dynamics in Nanog active state simulated by PHi-C adn0020_movie_s2.mp4 (5.37 MB) 2025-05-13 14:55:47 |
embryonic stem cell | PHi-C2 Genome DNA Modeling Mesoscale Brownian dynamics Nanog |
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GMS-97-3 4D Genome Analysis Using PHi-C2 |
982
A 4D genome analysis of PHi-C2 for mESCs (chr1: 130–135 Mb, 25-kb bins) fig3.pdf (363.37 KB) 2025-05-13 15:08:16 983 A 4D genome analysis of PHi-C2 for mESCs (chr1: 130–135 Mb, 25-kb bins) fig3.png (449.23 KB) 2025-05-13 15:08:49 |
embryonic stem cell | PHi-C2 Genome DNA Mesoscale MSD analysis Viscoelasticity Rheology |
